10 More Discussions You Might Find Interesting
1. Programming
My issue is that the perl script (as I have done it so far) created empty branches when I try to check some branches on existence.
I am using multydimentional hashes: found it as the best way for information that I need to handle. Saing multidimentional I means hash of hashes ... So, I have
... (2 Replies)
Discussion started by: alex_5161
2 Replies
2. Shell Programming and Scripting
Hi,
I have an hashes of hash, where hash is dynamic, it can be n number of hash. i need to compare data_count values of all .
my %result (
$abc => {
'data_count' => '10',
'ID' => 'ABC122',
}
$def => {
'data_count' => '20',
'ID' => 'defASe',
... (1 Reply)
Discussion started by: asak
1 Replies
3. Shell Programming and Scripting
Hi ,
i have the below code its working fine when i execute in unix , but its not working in windows could you pls explain me where i am going wrong.
This is the program
$data = { '1' => 'one' ,
'2' => 'two' ,
3 => 'three'
};
print "hello : $data->{'1'}... (2 Replies)
Discussion started by: ragilla
2 Replies
4. Shell Programming and Scripting
Hi,
In Perl, is it possible to use a range of numbers with '..' as a key in a hash?
Something in like:
%hash = (
'768..1536' => '1G',
'1537..2560' => '2G'
);
That is, the range operation is evaluated, and all members of the range are... (3 Replies)
Discussion started by: dsw
3 Replies
5. Shell Programming and Scripting
Can Someone explain me why even using Tie::IxHash I can not get the output data in the same order that it was inserted? See code below.
#!/usr/bin/perl
use warnings;
use Tie::IxHash;
use strict;
tie (my %programs, "Tie::IxHash");
while (my $line = <DATA>) {
chomp $line;
my(... (1 Reply)
Discussion started by: jgfcoimbra
1 Replies
6. Shell Programming and Scripting
Hi i am reading one file and creating Hash from the contents of it my issue is there are 3 different files in 3 different locations having same structure so for parsing these files i have one subroutine which returns hash after reading all the 3 files i need to create consolidated hash from three... (2 Replies)
Discussion started by: zedex
2 Replies
7. Shell Programming and Scripting
This is my data
1 0
1 0
1 1
1 2
1 6
1 7
Assume that first field is key and 2nd field is value
I want to create a hash in perl, on this data. My hash should having uniq key and all values by , separated.
1,0,0,1,2,6,7
1 will be my key and rest of are should be values. (3 Replies)
Discussion started by: pritish.sas
3 Replies
8. Shell Programming and Scripting
i want to ask is it i can use hash in perl to store a page number with a list of words which is in that page and then print it out?
Example
Page 1 contains a are boy cat ............. (a list of sorted words)
how can i store it in a hash?
Thank you (3 Replies)
Discussion started by: mingming88
3 Replies
9. Shell Programming and Scripting
i have an hash table in which each value is an array. How can i print for each key the array values??? something like this:
thanks (2 Replies)
Discussion started by: littleboyblu
2 Replies
10. Shell Programming and Scripting
Hi
Help me with some good links of Hash with in Hash .(Multidimensional hash)..
Regards
Harikrishna (1 Reply)
Discussion started by: Harikrishna
1 Replies
RE-PCR(1) General Commands Manual RE-PCR(1)
NAME
re-PCR -- Find sequence tagged sites (STS) in DNA sequences
SYNOPSIS
re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...]
re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...]
re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]]
re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...]
DESCRIPTION
Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per-
forming STS and primer searches.
OPTIONS
-p=hash-file
Perform primer lookup using hash-file
-P=hash-file
Perform primer lookup using hash-file
-s=hash-file
Perform STS lookup using hash-file
-S=hash-file
Perform STS lookup using hash-file
-n=mism Set max allowed mismatches per primer for lookup
-g=gaps Set max allowed indels per primer for lookup
-m=margin Set variability for STS size for lookup
-l Use presize alignments (only if gaps>0)
-G Print alignments in comments
-d=min-max
Set default STS size
-r=+|- Enable/disable reverse STS lookup
-O=+|- Enable/disable syscall optimisation
-C=batchcnt
Set number of STSes per batch
-o=outfile
Set output file name
-q Quiet (no progress indicator)
EXAMPLE
famap -tN -b genome.famap org/chr_*.fa
fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap
re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200
See famap(1) and fahash(1)
SEE ALSO
/usr/share/doc/ncbi-epcr/README.txt
bioperl(1), e-pcr(1), famap(1) and fahash(1)
AUTHORS
This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others). Permission is granted
to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by
the Free Software Foundation.
On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.
April 2008 RE-PCR(1)
