10 More Discussions You Might Find Interesting
1. UNIX for Dummies Questions & Answers
Can sort sort by pair of lines?
infile:
ID 15
GNJSMKSNS
ID 25
GNJSMKSNS
ID 1
GNJSMKSNS
outfile:
ID 1
GNJSMKSNS
ID 15
GNJSMKSNS
ID 25
GNJSMKSNS
sort -grk 2 obviously does not work (4 Replies)
Discussion started by: Xterra
4 Replies
2. UNIX for Dummies Questions & Answers
Hi,
I would like to batch concatenate files by pairs. I have quite a few of them so I would not like to do that pair by pair separately.
the names of the file is of the type:
file1.fastq
newfile1_new.fastq
file2.fastq
newfile2_new.fastq
and so on...
I would like to concatenate file1... (2 Replies)
Discussion started by: jawad
2 Replies
3. Shell Programming and Scripting
I would like to create a loop and an inner loop to do a diff command on each pair of files passed as arguments. For example, if four files were on the command line, a diff would run on 1-2, 1-3, 1-4, 2-3, 2-4, & 3-4. Thus far I know the $# will give the count of the arguments and argv (instead of... (4 Replies)
Discussion started by: wbport
4 Replies
4. Shell Programming and Scripting
Hi all,
Please guide. It has to do with parsing the input file names.
I have a fairly large number of files, I want to do some operations on them in a pairwise fashion (every file has a pair).
The names are in the following pattern, with the pairs of files named with _1 and _2 , the... (4 Replies)
Discussion started by: newbie83
4 Replies
5. Shell Programming and Scripting
I am extracting a number of key/value pairs in awk using following:
awk '
/xyz_session_id/ {
n=index($0,"xyz_session_id");
id=substr($0,n+15,25);
a=$4;
}
END{
for (ix in a) { print a }
}'
I don't like this Index + substr with manually calculated... (5 Replies)
Discussion started by: migurus
5 Replies
6. Shell Programming and Scripting
Hi all,
please help me construct the command. i want to loop through all files named bam* and bed*. My awk works for a particular pair but there are too many pairs to do manually.
I have generated multiple files in a folder in a given pattern. The files are named like
bam_fixed1.bam... (2 Replies)
Discussion started by: newbie83
2 Replies
7. UNIX for Dummies Questions & Answers
So I have a bunch of files that look like this
>gi|33332323
MMKCRGVIMVVEKVMKRDGRIVPFDESRIRWAVQ---
>gi|45235353
MMKCR----VEKMRDVFFDESIRWAVQ
They go on...sequences are much longer but all in two line (fasta) format.
I want to remove duplicate pairs of ID(GI) number and sequence. I tried... (12 Replies)
Discussion started by: bakere19
12 Replies
8. Shell Programming and Scripting
Hi,
I have a text file with the following contents
/C=IT/O=INFN/OU=Personal Certificate/L=Napoli/CN=Some guy
/C=IT/O=INFN/CN=INFN CA
/O=Grid/O=NorduGrid/OU=uninett.no/CN=Another guy
/O=Grid/O=NorduGrid/CN=NorduGrid Certification Authority
/C=TW/O=AP/OU=GRID/CN=Someone else... (5 Replies)
Discussion started by: kerl
5 Replies
9. Shell Programming and Scripting
I have a main file with variable tokens like this:
name: File1
===========
Destination/Company=@deploy.company@
Destination/Environment=@deploy.env@
Destination/Location=@deploy.location@
Destination/Domain=@deploy.location@
MIG_GatewayAddresses=@deploy.gwaddress@
MIG_URL=@deploy.mig_url@... (1 Reply)
Discussion started by: uandme2k2
1 Replies
10. Shell Programming and Scripting
Hello all
im facing some kind of problem i have this string :
functionA() $" "$ functionB("arg1") $" = "$
i will like to replace all the pairs of opening and closing "$" to be something like that
functionA() <#" "#> functionB("arg1") <#" = "#>
i cant of course do is with simple ... (1 Reply)
Discussion started by: umen
1 Replies
05-11-2012
