10 More Discussions You Might Find Interesting
1. AIX
This's my problem
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LC_ALL = "en_US.UTF-8",
LC__FASTMSG = "true",
LC_MESSAGES = "",
LC_CTYPE = "en_US.UTF-8",
LC_TYPE = "en_US.UTF-8",
LANG = "EN_US"... (1 Reply)
Discussion started by: bobochacha29
1 Replies
2. Shell Programming and Scripting
In the attached file I get this error. Thank you :).
C:\cygwin\home\cmccabe\windows_annovar.sh: line 117: perl: command not found (17 Replies)
Discussion started by: cmccabe
17 Replies
3. Shell Programming and Scripting
cat "C:\Program Files\BioDiscovery\Nexus 7\Organisms\Human\NCBI Build 37\refseq_genes.txt" | perl -aF/\\t/ -lne '$F=~/_/ and next; @st=split/\,/,$F;@en=split/\,/,$F;print join("\t",$F,$st,$en,$F) for (0..$#st)' | sort -u > refseq_exons.bed
sort: open failed: -u: No such file or directory
... (6 Replies)
Discussion started by: cmccabe
6 Replies
4. Shell Programming and Scripting
New to perl, trying to decipher and fix the below error: Thanks.
$ perl -ne 'chomp; system ("perl table_annovar.pl $_ humandb/ -buildver hg19 -protocol refGene,popfreq_all -operation g,f -otherinfo”)' < file.txt
Can't find string terminator '"' anywhere before EOF at -e line 1. (2 Replies)
Discussion started by: cmccabe
2 Replies
5. Shell Programming and Scripting
I have a PERL command line embedded in a UNIX script. The script doesn't handle errors coming out of this command. I'm processing large files and occassionally I run out of disk space and end up with half a file.
perl -p -e 's/\n/\r\n/g' < TR_TMP_$4 > $4
How do I handle errors coming out... (1 Reply)
Discussion started by: OTChancy
1 Replies
6. Shell Programming and Scripting
At this line in the perl script,
@databases = `crs_stat | grep .db | awk -F. '{print $2}'`;
It is throwing this error.
Use of uninitialized value in concatenation (.) or string at ........
Looks like it didn't like the 2 dots I have in the statements. Is there a way to get around this... (3 Replies)
Discussion started by: MKNENI
3 Replies
7. Shell Programming and Scripting
Hi, everyone!!
i am new to perl programming.. plz help me.
#!C:/perl/bin
use warnings;
use strict;
use Text::CSV_XS;
my @rows = "";
my $row;
my $count;
my $fh;
my @fields = "";
my $csv = Text::CSV_XS->new ({binary =>1}) or
die "cannot use CSV:" .Text::CSV->error_diag ();
open... (3 Replies)
Discussion started by: kvth
3 Replies
8. Shell Programming and Scripting
Hi all
I keep getting a segmentation fault error while running the script below.
#!/usr/bin/perl -w
use CGI ':standard';
use GD::Graph::pie;
use strict;
use warnings;
sub trim($)
{
my $string = shift;
$string =~ s/^\s+//;
$string =~ s/\s+$//;
... (4 Replies)
Discussion started by: pietie
4 Replies
9. Shell Programming and Scripting
# perl -p -w -e 's/</book>(?:\n)<collection>(.*)</collectioninfo>//g' test1.txt
Bareword found where operator expected at -e line 1, near "s/</book>(?:\n)<collection>(.*)</collectioninfo"
Unquoted string "collectioninfo" may clash with future reserved word at -e line 1.
syntax error at -e line... (3 Replies)
Discussion started by: dirdamalah
3 Replies
10. Programming
hi,
I am trying following TELNET script on SunOS terminal01 5.8 Generic_108528-27 sun4u sparc SUNW,Sun-Blade-100.
I am stuck up due to an Error I cannot fix out. please can some one here can help me out. I must be thankful.
code:
Error
output for perl -V
THX and... (3 Replies)
Discussion started by: Asteroid
3 Replies