10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I am using the below bash loop:
or f in /media/cmccabe/My Book Western Digital/10_29and30_2015/*.bam ; do
bname=`basename $f`
pref=${bname%%.bam}
samtools view -H $f | sed '/^@PG/d' | samtools reheader - $f > /home/cmccabe/Desktop/NGS/${pref}_newheader.bam
done
is the... (1 Reply)
Discussion started by: cmccabe
1 Replies
2. Shell Programming and Scripting
Hi everyone,
I'm trying to write my first ever shell script, the OS is Raspbian. The code I have written must be executed whenever a certain database has been modified. The database resides on a Windows server to which I have a mount point, and I have no control over the Windows server at all so... (2 Replies)
Discussion started by: gjws
2 Replies
3. Shell Programming and Scripting
#### ~]$ set "hello 'cat dog walk' money elephat"
#### ~]$ echo $* | awk '{print $2}'
'cat
why is the second command above showing only "'cat ?
shouldn't the output be:
'cat dog walk'
how can i fix this so it gives me the chosen column in its entirety? (11 Replies)
Discussion started by: SkySmart
11 Replies
4. Shell Programming and Scripting
I am organizing my music library on a NAS server. I want to print a list of all the directories that are missing the cover art (at least one or more jpeg file). I have successfully created a file with each line containing the path to each occurance of one or more .mp3 files. That path is also... (2 Replies)
Discussion started by: godfreydanials
2 Replies
5. Shell Programming and Scripting
Hi all,
I have a variable test has the following value assigned.. could you please help on doing cd or ls to the value in the varible ...
$echo $test
/bdm/sdd/compounds/AD4833XT/requests/clin/Watson_20090420/docs/MHRA\ Comments\ \&\ Responses
$cd $test
ksh: cd: bad argument count
$cd... (3 Replies)
Discussion started by: firestar
3 Replies
6. Shell Programming and Scripting
I have written a script to run ddrescue on a list of files.
#!/bin/bash
#
# A script to rescue data recursively using ddrescue.
srcDir=/damaged/hdd/movies/ #the source directory
desDir=/new/hdd/movies/ #the destination directory... (2 Replies)
Discussion started by: colsinc
2 Replies
7. Shell Programming and Scripting
hi all,
i am writing a ksh script, i am logging into an oracle db via sqlplus and running a select statement but i dont know how i can store the results from the sql so i can iterate over it and do more operations over it. I dont want to write a stored procedure with a cursor since i need to... (2 Replies)
Discussion started by: cesarNZ
2 Replies
8. Shell Programming and Scripting
I am facing a problem in replacing the file contents by iterating through the list.
My present code:
Code:
#!/bin/bash#
TFILE="/tmp/vinay/testb_1.txt"
while read linedo
aline="$line"
echo $aline
code=`echo $aline|cut -d ',' -f1`
country=`echo $aline|cut -d... (5 Replies)
Discussion started by: av_vinay
5 Replies
9. UNIX for Dummies Questions & Answers
Hi Gurus,
I have a requirement.
cat /usdd/Sample/"NDDF Plus DB"/"NDDF Descriptive and Pricing"/"NDDF BASICS 3.0"/"Pricing"/1.txt |
sed 's/*|*/|/g' |
sed 's/^*//'|
sed 's/^*//;
s/*$//' > temp.txt
In unix prompt the above command is reading the file 1.txt and I am... (1 Reply)
Discussion started by: prabhutkl
1 Replies
10. UNIX for Dummies Questions & Answers
Hello everyone,
I'm a unix noob. I have a powerbook running mac os x 10.4 and for one of my classes I need to install the latest version of php (5.0.5). I'm following the instructions at http://developer.apple.com/internet/opensource/php.html to install but I've run into a problem.
The... (2 Replies)
Discussion started by: kendokendokendo
2 Replies
APTONCD(1) General Commands Manual APTONCD(1)
NAME
aptoncd - CD/DVD-based repository creator for debian packages
SYNOPSIS
aptoncd [options]
DESCRIPTION
APTonCD is a complete solution to manage/backup/restore your packages downloaded via apt-get, aptitude and synaptic. APTonCD also is the
best choice to download an entire repository and/or specific section of selected mirror, by an pretty GUI.
A manual with detailed instructions can be found in the help menu of APTonCD.
OPTIONS
APTonCD accept the following command-line call methods:
-c, --packages-list=FILE
Starts aptoncd listing the packages in FILE
-l, --cache-dir=PATH
Uses PATH as apt cache dir (instead of /var/cache/apt/archives
-r, --temp-dir=PATH
Uses PATH as temporary directory for copying files and mounting images
AUTHORS
APTonCD is developed by Rafael Proenca <cypherbios@ubuntu.com> and Laudeci Oliveira <laudeci@gmail.com>, with some contributors that
can be found on the project page.
All development is done at http://aptoncd.sourceforge.net
This manual page was written by Rafael Proenca <cypherbios@ubuntu.com>.
COPYRIGHT
Copyright (C) 2007 Rafael Proenca
There is NO warranty. You may redistribute this software under the terms of the GNU General Public License. For more information about
these matters, see the files named copyright.
Aug 15th, 2007 APTONCD(1)