10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I am using the below bash loop:
or f in /media/cmccabe/My Book Western Digital/10_29and30_2015/*.bam ; do
bname=`basename $f`
pref=${bname%%.bam}
samtools view -H $f | sed '/^@PG/d' | samtools reheader - $f > /home/cmccabe/Desktop/NGS/${pref}_newheader.bam
done
is the... (1 Reply)
Discussion started by: cmccabe
1 Replies
2. Shell Programming and Scripting
Hi everyone,
I'm trying to write my first ever shell script, the OS is Raspbian. The code I have written must be executed whenever a certain database has been modified. The database resides on a Windows server to which I have a mount point, and I have no control over the Windows server at all so... (2 Replies)
Discussion started by: gjws
2 Replies
3. Shell Programming and Scripting
#### ~]$ set "hello 'cat dog walk' money elephat"
#### ~]$ echo $* | awk '{print $2}'
'cat
why is the second command above showing only "'cat ?
shouldn't the output be:
'cat dog walk'
how can i fix this so it gives me the chosen column in its entirety? (11 Replies)
Discussion started by: SkySmart
11 Replies
4. Shell Programming and Scripting
I am organizing my music library on a NAS server. I want to print a list of all the directories that are missing the cover art (at least one or more jpeg file). I have successfully created a file with each line containing the path to each occurance of one or more .mp3 files. That path is also... (2 Replies)
Discussion started by: godfreydanials
2 Replies
5. Shell Programming and Scripting
I have written a script to run ddrescue on a list of files.
#!/bin/bash
#
# A script to rescue data recursively using ddrescue.
srcDir=/damaged/hdd/movies/ #the source directory
desDir=/new/hdd/movies/ #the destination directory... (2 Replies)
Discussion started by: colsinc
2 Replies
6. Shell Programming and Scripting
I have a Bash script on Cygwin that tries to iterate through the directory entries in PATH. I need to convert the PATH value to a form that I can iterate through with "for var in $list; do".
For instance, an excerpt from my PATH value is this:
:/c/Program Files/Windows Imaging/:/c/Program... (2 Replies)
Discussion started by: dkarr
2 Replies
7. UNIX for Dummies Questions & Answers
Hi All,
I am facing issues converting white spaces and tabs together in a file I am reading. Here is the command I am trying:
tr -s ' '@ | sort -t@ +1n filename
I guess the problem is that it is not converting the tabs to another delimiter. Also, I am supposed to accomplish this only using... (5 Replies)
Discussion started by: sh_kk
5 Replies
8. UNIX for Dummies Questions & Answers
Hi Gurus,
I have a requirement.
cat /usdd/Sample/"NDDF Plus DB"/"NDDF Descriptive and Pricing"/"NDDF BASICS 3.0"/"Pricing"/1.txt |
sed 's/*|*/|/g' |
sed 's/^*//'|
sed 's/^*//;
s/*$//' > temp.txt
In unix prompt the above command is reading the file 1.txt and I am... (1 Reply)
Discussion started by: prabhutkl
1 Replies
9. Shell Programming and Scripting
public class HelloWorld {
public static void main(String args) {
System.out.println("Welcome, master");
}
}
and I compiled using
javac HelloWorld.java
]
Suppose that I execute the following command directly from the shell:
java -XX:OnError="gdb - %p" HelloWorld
Then it works... (8 Replies)
Discussion started by: fabulous2
8 Replies
10. UNIX for Dummies Questions & Answers
Hello everyone,
I'm a unix noob. I have a powerbook running mac os x 10.4 and for one of my classes I need to install the latest version of php (5.0.5). I'm following the instructions at http://developer.apple.com/internet/opensource/php.html to install but I've run into a problem.
The... (2 Replies)
Discussion started by: kendokendokendo
2 Replies
