10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I am using the below bash loop:
or f in /media/cmccabe/My Book Western Digital/10_29and30_2015/*.bam ; do
bname=`basename $f`
pref=${bname%%.bam}
samtools view -H $f | sed '/^@PG/d' | samtools reheader - $f > /home/cmccabe/Desktop/NGS/${pref}_newheader.bam
done
is the... (1 Reply)
Discussion started by: cmccabe
1 Replies
2. Shell Programming and Scripting
Hi everyone,
I'm trying to write my first ever shell script, the OS is Raspbian. The code I have written must be executed whenever a certain database has been modified. The database resides on a Windows server to which I have a mount point, and I have no control over the Windows server at all so... (2 Replies)
Discussion started by: gjws
2 Replies
3. Shell Programming and Scripting
#### ~]$ set "hello 'cat dog walk' money elephat"
#### ~]$ echo $* | awk '{print $2}'
'cat
why is the second command above showing only "'cat ?
shouldn't the output be:
'cat dog walk'
how can i fix this so it gives me the chosen column in its entirety? (11 Replies)
Discussion started by: SkySmart
11 Replies
4. Shell Programming and Scripting
I am organizing my music library on a NAS server. I want to print a list of all the directories that are missing the cover art (at least one or more jpeg file). I have successfully created a file with each line containing the path to each occurance of one or more .mp3 files. That path is also... (2 Replies)
Discussion started by: godfreydanials
2 Replies
5. Shell Programming and Scripting
Hi all,
I have a variable test has the following value assigned.. could you please help on doing cd or ls to the value in the varible ...
$echo $test
/bdm/sdd/compounds/AD4833XT/requests/clin/Watson_20090420/docs/MHRA\ Comments\ \&\ Responses
$cd $test
ksh: cd: bad argument count
$cd... (3 Replies)
Discussion started by: firestar
3 Replies
6. Shell Programming and Scripting
I have written a script to run ddrescue on a list of files.
#!/bin/bash
#
# A script to rescue data recursively using ddrescue.
srcDir=/damaged/hdd/movies/ #the source directory
desDir=/new/hdd/movies/ #the destination directory... (2 Replies)
Discussion started by: colsinc
2 Replies
7. Shell Programming and Scripting
hi all,
i am writing a ksh script, i am logging into an oracle db via sqlplus and running a select statement but i dont know how i can store the results from the sql so i can iterate over it and do more operations over it. I dont want to write a stored procedure with a cursor since i need to... (2 Replies)
Discussion started by: cesarNZ
2 Replies
8. Shell Programming and Scripting
I am facing a problem in replacing the file contents by iterating through the list.
My present code:
Code:
#!/bin/bash#
TFILE="/tmp/vinay/testb_1.txt"
while read linedo
aline="$line"
echo $aline
code=`echo $aline|cut -d ',' -f1`
country=`echo $aline|cut -d... (5 Replies)
Discussion started by: av_vinay
5 Replies
9. UNIX for Dummies Questions & Answers
Hi Gurus,
I have a requirement.
cat /usdd/Sample/"NDDF Plus DB"/"NDDF Descriptive and Pricing"/"NDDF BASICS 3.0"/"Pricing"/1.txt |
sed 's/*|*/|/g' |
sed 's/^*//'|
sed 's/^*//;
s/*$//' > temp.txt
In unix prompt the above command is reading the file 1.txt and I am... (1 Reply)
Discussion started by: prabhutkl
1 Replies
10. UNIX for Dummies Questions & Answers
Hello everyone,
I'm a unix noob. I have a powerbook running mac os x 10.4 and for one of my classes I need to install the latest version of php (5.0.5). I'm following the instructions at http://developer.apple.com/internet/opensource/php.html to install but I've run into a problem.
The... (2 Replies)
Discussion started by: kendokendokendo
2 Replies