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Remove specific pattern header and its content problem facing

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# 1  
Old 03-09-2010
Remove specific pattern header and its content problem facing
Input file:
Code:
>TRACK:[NAME] Position:  1 TYPE:  1  Pos:   
SVAVPQRHHPGGTVFREPIIIPAIPRLVPGWNKPIIIGRHAFGDQYRATDRVIPGPGKLE
LVYTPVNGEPETVKVYDFQGGGIAQTQYNTDESIRGFAHASFQMALLKGLPLYMSTKNTI
LKRYDGRFKDIFQEIYESTYQKDFEAKNLWYEHRLIDDMVAQMIKSEGGFVMALKNYDGD
>TRACK:[TYPE] Position:  1 TYPE:  2  Pos:  
FAHASFQMALLKGLPLYMS
>TRACK:[TYPE] Position:  2 TYPE:  3  Pos:  
FAHASFQMALLKGLPLYMSFAHASFQMALLKGLPLYMSFAHASFQMALLKGLPLYMS
>TRACK:   1   5 TYPE (s)    963  -   3075   
MSSVRFSSALARRSFAVASPPLSAPLSSSARRFLSSSSSTISSSSSSVSTRSPRSLTSAS
SLLSSRTASARWTGLSSLNLTQSRTMATEIPKIKVKNPVVELDGDEMTRIIWQEIREKGL
EYRDQTDDQVTVEAAEAIKKYGVGVKCATITPDEARVEEFKLKKSTHTEACEWSHTNPCF
SVAVPQRHHPGGTVFREPIIIPAIPRLVPGWNKPIIIGRHAFGDQYRATDRVIPGPGKLE
LVYTPVNGEPETVKVYDFQGGGIAQTQYNTDESIRGFAHASFQMALLKGLPLYMSTKNTI
LKRYDGRFKDIFQEIYESTYQKDFEAKNLWYEHRLIDDMVAQMIKSEGGFVMALKNYDGD
VQSDIVAQGFGSLGLMTSTLVTPTGEAFESEAAHGTVTRHYREHQKGRETSTNPIASIFA
WTRGLIQRGKLDETPDVVTFAEELERACIEVVNDEGIMTKDLALACGRKEREAWVTTREY
MAAVERRLKANLKSRL
.
.
.

Output file:
Code:
>TRACK:[NAME] Position:  1 TYPE:  1  Pos:   
SVAVPQRHHPGGTVFREPIIIPAIPRLVPGWNKPIIIGRHAFGDQYRATDRVIPGPGKLE
LVYTPVNGEPETVKVYDFQGGGIAQTQYNTDESIRGFAHASFQMALLKGLPLYMSTKNTI
LKRYDGRFKDIFQEIYESTYQKDFEAKNLWYEHRLIDDMVAQMIKSEGGFVMALKNYDGD
>TRACK:   1   5 TYPE (s)    963  -   3075   
MSSVRFSSALARRSFAVASPPLSAPLSSSARRFLSSSSSTISSSSSSVSTRSPRSLTSAS
SLLSSRTASARWTGLSSLNLTQSRTMATEIPKIKVKNPVVELDGDEMTRIIWQEIREKGL
EYRDQTDDQVTVEAAEAIKKYGVGVKCATITPDEARVEEFKLKKSTHTEACEWSHTNPCF
SVAVPQRHHPGGTVFREPIIIPAIPRLVPGWNKPIIIGRHAFGDQYRATDRVIPGPGKLE
LVYTPVNGEPETVKVYDFQGGGIAQTQYNTDESIRGFAHASFQMALLKGLPLYMSTKNTI
LKRYDGRFKDIFQEIYESTYQKDFEAKNLWYEHRLIDDMVAQMIKSEGGFVMALKNYDGD
VQSDIVAQGFGSLGLMTSTLVTPTGEAFESEAAHGTVTRHYREHQKGRETSTNPIASIFA
WTRGLIQRGKLDETPDVVTFAEELERACIEVVNDEGIMTKDLALACGRKEREAWVTTREY
MAAVERRLKANLKSRL
.
.
.

Does anybody know how to remove those content that header start with ">TRACK:[TYPE] Position:" pattern and its relative contents? It seems like awk and sed able to archive this goal.
Thanks a lot for any sharing and advice.
# 2  
Old 03-09-2010
Sed...

Code:
sed '/^\>TRACK\:\[TYPE\]/d' infile

Awk...

Code:
awk '/^\>TRACK\:\[TYPE\]/{next}1' infile

# 3  
Old 03-09-2010
Hi malcomex999,
Thanks a lot for your suggestion. But it seems like not worked to my case?Smilie
# 4  
Old 03-09-2010
Quote:
Originally Posted by patrick87
Hi malcomex999,
Thanks a lot for your suggestion. But it seems like not worked to my case?Smilie
What do you mean by not working?
is it throwing error and not giving expected output?
# 5  
Old 03-09-2010
Hi, it seems like don't give the expected output result Smilie
It gives the output result same as my input file?
Thanks again for your help.
# 6  
Old 03-09-2010
Code:
local $/="\n>";
while(<DATA>){

if(not /\[TYPE\]/){
	print;
}
}
__DATA__
>TRACK:[NAME] Position:  1 TYPE:  1  Pos:   
SVAVPQRHHPGGTVFREPIIIPAIPRLVPGWNKPIIIGRHAFGDQYRATDRVIPGPGKLE
LVYTPVNGEPETVKVYDFQGGGIAQTQYNTDESIRGFAHASFQMALLKGLPLYMSTKNTI
LKRYDGRFKDIFQEIYESTYQKDFEAKNLWYEHRLIDDMVAQMIKSEGGFVMALKNYDGD
>TRACK:[TYPE] Position:  1 TYPE:  2  Pos:  
FAHASFQMALLKGLPLYMS
>TRACK:[TYPE] Position:  2 TYPE:  3  Pos:  
FAHASFQMALLKGLPLYMSFAHASFQMALLKGLPLYMSFAHASFQMALLKGLPLYMS
>TRACK:   1   5 TYPE (s)    963  -   3075   
MSSVRFSSALARRSFAVASPPLSAPLSSSARRFLSSSSSTISSSSSSVSTRSPRSLTSAS
SLLSSRTASARWTGLSSLNLTQSRTMATEIPKIKVKNPVVELDGDEMTRIIWQEIREKGL
EYRDQTDDQVTVEAAEAIKKYGVGVKCATITPDEARVEEFKLKKSTHTEACEWSHTNPCF
SVAVPQRHHPGGTVFREPIIIPAIPRLVPGWNKPIIIGRHAFGDQYRATDRVIPGPGKLE
LVYTPVNGEPETVKVYDFQGGGIAQTQYNTDESIRGFAHASFQMALLKGLPLYMSTKNTI
LKRYDGRFKDIFQEIYESTYQKDFEAKNLWYEHRLIDDMVAQMIKSEGGFVMALKNYDGD
VQSDIVAQGFGSLGLMTSTLVTPTGEAFESEAAHGTVTRHYREHQKGRETSTNPIASIFA
WTRGLIQRGKLDETPDVVTFAEELERACIEVVNDEGIMTKDLALACGRKEREAWVTTREY
MAAVERRLKANLKSRL

# 7  
Old 03-09-2010
Hi summer,
the code that you suggested should write in a script, right?
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