8 More Discussions You Might Find Interesting
1. UNIX for Dummies Questions & Answers
Hi Unix Gurus,
I have a file with data like:
>header_1
TCCCCGA
>header_2
CCAATTGGGTA
The data to work with starts from the next line after '>header_xx'.
(1)
I want to search the three letter patterns 'CHH' or 'DDG' and replace C and G by exclamation ! so that CHH becomes !HH and DDG... (3 Replies)
Discussion started by: Fahmida
3 Replies
2. Shell Programming and Scripting
Greetings.
I have a vector of numbers such as the following:
1
75
79
90
91
92
109
120
167
198
203
204
206
224
230
236
240 (4 Replies)
Discussion started by: Twinklefingers
4 Replies
3. Shell Programming and Scripting
Hey all. I am working on some scripts in bash to perform a variety of functions; there are a variety of steps involved, and they must happen in a specific sequence; what I need help with is a way to calculate some differences in a timestamp in a logfile.
One of the steps in the scripts I am... (3 Replies)
Discussion started by: danowar
3 Replies
4. Shell Programming and Scripting
I have a sting of "0"s and "1"s that I need to analyze. I need to look at each "1" and determine if it is in a neighborhood that is enriched for "1"s which means it is one of at least three "1"s in a 4 character window. My desired output is a count of "1"s in an enriched area.
For Example
Input... (1 Reply)
Discussion started by: monstrousturtle
1 Replies
5. Shell Programming and Scripting
Dear experts,
I have an epoch time input file such as : -
1302451209564
1302483698948
1302485231072
1302490805383
1302519244700
1302492787481
1302505299145
1302506557022
1302532112140
1302501033105
1302511536485
1302512669550
I need the epoch time above to be converted into real... (4 Replies)
Discussion started by: aismann
4 Replies
6. UNIX for Dummies Questions & Answers
Very simple problem I am not able to solve. I have been trying to modify the following code:
awk '{t=$1; c = x}{for (i = 1; i <= length; i += wn)print t FS"" substr($2, i, mx) > ("block" ++c)}' mx=100 wn=100 infile.txt
What I am tryng to acccomplish, I have a bunch of files where the first... (3 Replies)
Discussion started by: Xterra
3 Replies
7. Shell Programming and Scripting
Hi!
I have some sequencing data that I have aligned using maq software
Now, I have data that looks like this each line is a 'tag'
chr1 10001
chr1 10002
chr1 10005
chr1 10007
chr1 10008
chr1 10008
chr1 10008
chr1 10019
chr1 10019
chr1 10020
What I really want to find out is how... (1 Reply)
Discussion started by: biobio
1 Replies
8. UNIX for Dummies Questions & Answers
What's the best way to run two OS's in real time??
I want to run Windows 2k professional and a flavor of UNIX in real time and flip between the two. I have vmware ver. 3.2 and Virtual PC 4.3.
I would preferably like to run Win2k with Solaris 8 (intel version) but I'll download Freebsd if... (1 Reply)
Discussion started by: fusion99
1 Replies