10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
OS : Oracle Linux 6.8
shell : bash
As shown below, I have multiple files like below (query1-extract_aa, query1-extract_ab, query1-extract_ac, ....)
$ ls -l
total 235680
-rw-rw-r-- 1 reportusr reportusr 30M May 3 11:25 query1-extract_aa
-rw-rw-r-- 1 reportusr reportusr 30M May 3 11:25... (5 Replies)
Discussion started by: kraljic
5 Replies
2. Shell Programming and Scripting
Hey guys,
I have wrote the following script to apply a module named "trinity" on my files. (it takes two input files and spit a trinity.fasta as output)
#!/bin/bash -l
#SBATCH -p node
#SBATCH -A <projectID>
#SBATCH -n 16
#SBATCH -t 7-00:00:00
#SBATCH --mem=128GB
#SBATCH --mail-type=ALL... (1 Reply)
Discussion started by: @man
1 Replies
3. Shell Programming and Scripting
I have multiple files in folder which i want to rename. hence I am using the below command in my script by I get an error:
export XXX_LOG_DIR="${LOG_DIR}/${XXX_HOST}/xxx/${REPORT_DATE}"
mv $XXX_LOG_DIR/*.audit.gz $XXX_LOG_DIR/*.audit.log.gz
But I get the below error:
mv: target... (5 Replies)
Discussion started by: karan8810
5 Replies
4. UNIX for Dummies Questions & Answers
Hey guys, I am the definition of a newbie. I am in the process of trying to rip all my dvds onto a new HTPC I setup. While doing this, I am also trying to organize a bunch of other files I already have to proper naming conventions. So far I have just been naming each file separately (I am on a... (4 Replies)
Discussion started by: Ralze34
4 Replies
5. Shell Programming and Scripting
hello:
I have multiple files with names like: somestring_y2010m01d01
somestring_y2010m01d02
..........
somestring_y2010m12d31
How... (4 Replies)
Discussion started by: sylcam
4 Replies
6. Shell Programming and Scripting
Hi
I need to reanme the multiple file using unix script
I have multiple file
like:
sample_YYYYMMDD.xls
test new_YYYYMMDD.xls
simple_YYYYMMDD.xls
I need to rename this file
sample.xls
testnew.xls
SIMPLE.xls
thanks (8 Replies)
Discussion started by: murari83.ds
8 Replies
7. Shell Programming and Scripting
I have a question regarding Perl scripting.
If I want to say open files that all look like this and assign them to a filehandle and then assign the filehandle to a variable, how do I do this?
The file names are
strand1.fa.gz.tmp
strand2.fa.gz.tmp
strand3.fa.gz.tmp
strand4.fa.gz.tmp
...... (6 Replies)
Discussion started by: japaneseguitars
6 Replies
8. Shell Programming and Scripting
I have several hundred files in one directory which I need to move to another directory with the new extension, for example:
/bb/data/rptmgr* are in the source directory need to be moved to
/bb/data55/rptmgr*.new
Is there an efficient way to do it? Thanks -A (4 Replies)
Discussion started by: aoussenko
4 Replies
9. Shell Programming and Scripting
Hi,
can anyone have a ksh script to rename multiple files (ie to remove .Z extension of the files)
can someone correct this?
for i in *.Z
do
var1 = substr($i, 1,at(".Z",$i)-1)
mv $i $var1
done
Thanks..
Antony (13 Replies)
Discussion started by: antointoronto
13 Replies
10. UNIX for Dummies Questions & Answers
Hello,
I want to rename multiple files at a time and I don't know how to do it.
I have various ".mp3" files, like "band name - music name.mp3" and I want to remove the "band name" from all files.
Anybody knows how to do it using shell script or sed or even perl?
Thanks (7 Replies)
Discussion started by: luiz_fer10
7 Replies