10 More Discussions You Might Find Interesting
1. UNIX for Beginners Questions & Answers
Hello,
I have the following script
while read id fraction
do
sambamba -h -f bam -t 10 --subsampling-seed=50 -s $frac ${id}.bam -o ${id}.out.bam
done < fraction.txt
where fraction.txt has two columns (id,fraction) and 50 rows
I am unable to run this as bash is not able to read the second... (2 Replies)
Discussion started by: nans
2 Replies
2. Shell Programming and Scripting
Hi again. Sorry for all the questions — I've tried to do all this myself but I'm just not good enough yet, and the help I've received so far from bartus11 has been absolutely invaluable. Hopefully this will be the last bit of file manipulation I need to do.
I have a file which is formatted as... (4 Replies)
Discussion started by: crunchgargoyle
4 Replies
3. Shell Programming and Scripting
Hi,
I'm trying to match a filename that could be called anything from vout001 to vout252 and was trying to do a small test but I'm not getting the result I thought I would..
Can some one tell me what I'm doing wrong?
*****@********>echo $mynumber ... (4 Replies)
Discussion started by: Jazmania
4 Replies
4. Shell Programming and Scripting
I am trying to make a script to read marks from a file then find out how many of them are above 40 (passing marks). However my script is getting stuck at "read num". I dont understand whats the problem. Any help will be much appreciated.
#!/bin/bash
set -x
count=0; countP=0; PASSMK=40... (6 Replies)
Discussion started by: vish6251
6 Replies
5. Shell Programming and Scripting
Hello All,
I am having problem to find what is the smallest number from 90% of highest numbers from all numbers in file. I am having file with thousands of lines and hundreds of columns.
I am familiar mainly with bash but I am open to whatever suggestion witch will lead to the solutions.
If I... (11 Replies)
Discussion started by: Apfik
11 Replies
6. UNIX for Dummies Questions & Answers
Hi I have a data file with two columns which looks like:
1 42
2 40
3 55
4 50
5 38
6 49
7 33
8 46
9 39
10 33
11 33
12 26
13 46
14 44
15 55
16 54
17 30
18 32 (7 Replies)
Discussion started by: marhuu
7 Replies
7. UNIX for Dummies Questions & Answers
Hello,
I have a column where there are values from 1 to 150.
I want to get the frequency of values in the following ranges:
1-5
6-10
11-15
....
....
....
146-150
How can I do this in a for loop?
Thanks,
Guss (1 Reply)
Discussion started by: Gussifinknottle
1 Replies
8. Shell Programming and Scripting
I am trying to add free and used memory (so that i can compute percentage used)of remote nodes using shell script. I use the openssh-server,expect tool and ssh script.
1)login.txt (info of nodes):
ip1|username|password
ip2|username|password
.
.
.
3)sshlogin.sh
#!/bin/bash ... (1 Reply)
Discussion started by: marmik1903
1 Replies
9. Shell Programming and Scripting
I have a text file in the following format
....
START
1,1
2,1
3,1
..
..
9,1
10,1
END
....
I want to change to the output to
....
START
1,1
2,1
3,1
.. (4 Replies)
Discussion started by: VNR
4 Replies
10. UNIX for Dummies Questions & Answers
Hi im new to unix and need to find a way to grep the top 5 numbers in a file and put them into another file. For example my file looks like this
abcdef 50000
abcdef 45000
abcdef 40000
abcdef 35000
abcdef 30000
abcdef 25000
abcdef 20000
abcdef 15000
abcdef 10000
and so on...
How can... (1 Reply)
Discussion started by: ProgChick2oo9
1 Replies