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Thank you for your fine help,
Cheers!

Dear All,
I would like some help to process the following file

ID n_exons start end
Zfp85-rs1 4 67747799,67751609,67752387,67755062, 67749722,67751705,67752514,67755134,...

Many Thansk for your help,
Now it works,
Best Paolo

Hi R. Singh

I tried yor script with awk 'BEGIN{for(i=1;i<=ARGC;i++){O=O?O OFS ARGV[i]:ARGV[i]};print O} FNR==NR{A[$1]=$0;next} ($1 in A){print A[$1] OFS $NF}' *filename*

actually the header of...

Dear All,
I have many files formatted like this:

file1.txt:

1/2-SBSRNA4 18
A1BG 3
A1BG-AS1 6
A1CF 0
A2LD1 1
A2M 1160

file2.txt

1/2-SBSRNA4 53
A1BG 1
A1BG-AS1 7
A1CF 0
A2LD1 3...

Many many thanks,
Paolo

Dear All,
I would like to compare two files and return the number of matches found.
Example

File A
Lx2
L1_Mus1
L1Md_T
Lx5
L1M2
L1_Mus3
Lx3_Mus
Lx9
Lx2A
L1Md_A
L1Md_F2

File B...

It seems working but I have a bad tab file in my input file (just after my ID..)

ID let-7 \t
MI MI0000001 cel-let-7
MI MI0000060 hsa-let-7a-1

a never ending perl script...

the file is 300000 lines..

---------- Post updated at 05:21 AM ---------- Previous update was at 04:10 AM ----------

could you please help me,

I treid this...

Dear All,
I have the following file:

ID mir-430
MI MI0001527 dre-mir-430a-1
MI MI0001528 dre-mir-430b-1
MI MI0001529 dre-mir-430c-1
ID MIR166
MI MI0000199 ath-MIR165a...

Hi,
Is the same because they have the same score

Thanks,
That's really help me!
Another issue concerning the output file:
let's imagine I have the following output for 1_distance:


ID distanceTSS score
8434 8 10
8434 999 10
7652 6 9...

Dear All,
I have the following file tabulated:

ID distanceTSS score
8434 571269 10
10122 393912 9
7652 6 10
4863 1451 9
8419 39 2
9363 564 21
9333 7714 22
9638 8334 9
1638 1231 11...

Dear All,

Could someone please help me in comparing two files,
for example I have two file

file A

2999976 0.0275469
3000001 0.0362459
3000026 0.0362459
3000051 0.0362459


file B
...

Many many thanks!
Paolo

Dear All,
I have a file containing 1134 columns and 20825 rows,
tabulated as follow


-4000 -3900 -3800 -3700 -3600 -3500 -3400
NR_033530 0 0 0 0 0 0 0
NM_001162375 0 0 0 0 0 0 0...

Amazing thanks again for all your support!

Dear ALL,
I would really appreciate if you could help me in reformatting a file in this way:

The file refers to a list of genetic coordinates, each lines has a score value and the associated...

thanks!
paolo

great that's work, but I realized that in my input file I have no empty lines,
for example:

0610009O20Rik
V$VMYB_01 310 (+) 1 0.971 v-Myb
V$EVI1_04 782 (-) 0.763 0.834 Evi-1...

Dear All,
I would like to find an automatic way to add a given code which belong to a class at the end of the column , for example this is my input file:


0610009O20Rik ...

thanks a lot is working fine!!
that really helps!

Dear All,
I would really appreciate if you can help me to resolve this file comparison

I have two files:


file1:
chr start end ID gene_name
chr1 2020 3030 1 test1...

thanks is working fine,
paolo

Dear All,
I have to split a tab delimited file in two files based on the presence of a positive or negative in column number 9 , for example

file:
A 1 5 erg + 6766 0.9889 0.9817 ...