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@Aia. omg duh. you are so right.

The red text at the bottom represents the three lines I want to address.
I'm dynamically creating a bsub with a perl script and would like to create the fasta_16S variable in a single line....not...

Hi,

I'm not real familiar with sed, but I need to capture the year this directory path. Here's what I have so far. I'm able to capture the run name, but I want the only the year that's within the...

I would like to take a fasta file formated like
>0001
agttcgaggtcagaatt
>0002
agttcgag
>0003
ggtaacctga

and use command line perl to move the all sample gt 8 in length to a new file. the...

worked. awesome. thanks.

Hi,

I have some sample names. The regions in red are what I want to extract.

AIB13-positive
AIB13-blank
AIB13-1116-0022999
GNX13-1521-0003532

Each of the sample names are represented as...

I'll try that. I'll ls then sleep and then see if it works

---------- Post updated 12-10-13 at 11:26 AM ---------- Previous update was 12-09-13 at 05:08 PM ----------

It's not working. I don't...

That might explain why able to mount without any issues to the windows machines and not the macs. Is there a similar 'bg' command for cifs?

bg = background mount

It's so when a machine is off and can't be mounted, it doesn't end my shell script, it just continues to the next mount.

http://unixhelp.ed.ac.uk/CGI/man-cgi?nfs+5
It's...

Hi,

I have a cronjob that mounts machines every 15 minutes.

sudo mount -t cifs -o username=Ren_user,password=AIB#1109$,nounix,bg,sec=ntlmssp //10.204.129.233/Desktop /mnt/clinical/234mac

...

bg worked like a charm, I haven't tried &. yet

Hi,

I'm trying to automate a couple of mounts. (I would do this in fstab, but the auto feature causes the virtual machine I'm running in to freeze when it boots up) If the machine I'm trying to...

Hi,

I'm trying to mount machines that are 'ON' with an expect script. I would put these guys in fstab, but the virtual machine that runs script seems to freeze up/shutdown if one of the machines...

What's the second driver?

Also, do you have any other suggestions for getting into this mac?

These ip addresses are going to biotech machines and a lot of their contents were developed by previous IT hires. aka I'm not sure what's in a lot of them and also can't get into them directly...

I'm not sure if the 'c' dir is there or not. It is in the windows. I removed it and still..
Does samba need to be installed on the other device? If so, maybe that's my problem.
...

[informatics@aib-bitest mountAGIs]$ sudo mount -t cifs //10.204.129.234/c$ /mnt/clinical/234mac
Password:
mount error(22): Invalid argument
Refer to the mount.cifs(8) manual page (e.g. man...

[informatics@aib-bitest mountAGIs]$ sudo mount -t cifs -o username=Ren_user,password=AIB#1109$ //10.204.129.126/c$ /mnt/clinical/234mac
[sudo] password for informatics:
Unable to find suitable...

Hi,

I've been able to mount my linux box to a windows machine, but I can't seem to mount my linux box to another linux box I have. (I know I could scp, but for other reasons I need to do it this...

Worked like a charm. Is there any decent documentation on using command line perl? Every time I google 'command line' and 'perl' together I get hits for passing arguments to a perl script.

Hi,

I would like to use a shell variable $amp in my perl command line.


for fa in $WORKSPACE/*.fa; do

amp=`grep ">.*" $fa | sed -e's#>\(.*\)#\1#g'`...

The output is a really, really large txt file. (I've attached a really small example)
That line of code was written by another bioinformaticist who is more familiar with the file types than I am. He...

Thanks balajesuri, but even with the fix, I still got the same error.

What I found interesting was the command echoed from the 'run' statement. They aren't identical (aside from the file names).
...

Sorry, I will try to be a little more descriptive.

I'm using a shell script template provide by life technologies; meaning the 'run' function is not of my creation. From what I can tell, it's...

'run' with "./shellscript" -- no success :/