9 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hi, I have a hash of hash where it has
name, activities and count
i have data like this -
$result->{$name}->{$activities} = $value;
content of that are -
name - robert tom cat peter
activities - running, eating, sleeping , drinking, work
i need to print output as below
... (3 Replies)
Discussion started by: asak
3 Replies
2. Shell Programming and Scripting
Hello gurus, Iam trying to parse following BibTex file (bibliography.bib):
@book{Lee2000a,
abstract = {Abstract goes here},
author = {Lee, Wenke and Stolfo, Salvatore J},
title = {{Data mining approaches for intrusion detection}},
year = {2000}
}
@article{Forrest1996,
abstract =... (0 Replies)
Discussion started by: wakatana
0 Replies
3. Shell Programming and Scripting
Hi,
I have an hashes of hash, where hash is dynamic, it can be n number of hash. i need to compare data_count values of all .
my %result (
$abc => {
'data_count' => '10',
'ID' => 'ABC122',
}
$def => {
'data_count' => '20',
'ID' => 'defASe',
... (1 Reply)
Discussion started by: asak
1 Replies
4. Shell Programming and Scripting
Hi,
In Perl, is it possible to use a range of numbers with '..' as a key in a hash?
Something in like:
%hash = (
'768..1536' => '1G',
'1537..2560' => '2G'
);
That is, the range operation is evaluated, and all members of the range are... (3 Replies)
Discussion started by: dsw
3 Replies
5. Shell Programming and Scripting
Can Someone explain me why even using Tie::IxHash I can not get the output data in the same order that it was inserted? See code below.
#!/usr/bin/perl
use warnings;
use Tie::IxHash;
use strict;
tie (my %programs, "Tie::IxHash");
while (my $line = <DATA>) {
chomp $line;
my(... (1 Reply)
Discussion started by: jgfcoimbra
1 Replies
6. Shell Programming and Scripting
Hello,
I have a hash in hsh. I need to assign it to another hash globalHsh. I think the below statement does not work
$globalHsh{$id} = %hsh;
What is the right way to assign it?
Thanks (3 Replies)
Discussion started by: rsanjay
3 Replies
7. Filesystems, Disks and Memory
I analysed disk performance with blktrace and get some data:
read:
8,3 4 2141 2.882115217 3342 Q R 195732187 + 32
8,3 4 2142 2.882116411 3342 G R 195732187 + 32
8,3 4 2144 2.882117647 3342 I R 195732187 + 32
8,3 4 2145 ... (1 Reply)
Discussion started by: W.C.C
1 Replies
8. Shell Programming and Scripting
I have a script with dynamic hash of hashes , and I want to print the entire hash (with all other hashes).
Itried to do it recursively by checking if the current key is a hash and if yes call the current function again with refference to the sub hash.
Most of the printing seems to be OK but in... (1 Reply)
Discussion started by: Alalush
1 Replies
9. Shell Programming and Scripting
I have a file with a format of
A,2
B,2
G,3
A,2
A,3
A,2
D,7
A,2
E,2
A,2
I need to create a sum of each alphabet with the numbers assigned to it using awk. (2 Replies)
Discussion started by: dinjo_jo
2 Replies
RE-PCR(1) General Commands Manual RE-PCR(1)
NAME
re-PCR -- Find sequence tagged sites (STS) in DNA sequences
SYNOPSIS
re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...]
re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...]
re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]]
re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...]
DESCRIPTION
Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per-
forming STS and primer searches.
OPTIONS
-p=hash-file
Perform primer lookup using hash-file
-P=hash-file
Perform primer lookup using hash-file
-s=hash-file
Perform STS lookup using hash-file
-S=hash-file
Perform STS lookup using hash-file
-n=mism Set max allowed mismatches per primer for lookup
-g=gaps Set max allowed indels per primer for lookup
-m=margin Set variability for STS size for lookup
-l Use presize alignments (only if gaps>0)
-G Print alignments in comments
-d=min-max
Set default STS size
-r=+|- Enable/disable reverse STS lookup
-O=+|- Enable/disable syscall optimisation
-C=batchcnt
Set number of STSes per batch
-o=outfile
Set output file name
-q Quiet (no progress indicator)
EXAMPLE
famap -tN -b genome.famap org/chr_*.fa
fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap
re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200
See famap(1) and fahash(1)
SEE ALSO
/usr/share/doc/ncbi-epcr/README.txt
bioperl(1), e-pcr(1), famap(1) and fahash(1)
AUTHORS
This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others). Permission is granted
to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by
the Free Software Foundation.
On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.
April 2008 RE-PCR(1)