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I'm a little concerned with your solution Yoda.

Is it guaranteed that the totals printed are going to match the headings, i.e. will for (k in H) be in the same order as for (k in R)?

Also...

An awk approach:
awk '
NR == 1 {
for ( i = 1; i <= NF; i++ )
{
A[i] = $i
H[$i]
}
...

Try something like:
awk -F\| 'NR==FNR{A[$1]=$2; next} {print $1, A[">" $1]}' file2 file1

ABC chr15:176578-187678[-]: ['CCTGCGT']
XYZ
PQR chr3:14567-15866[+]: ['CCTYHGV','TLKJNWYT',TTGCDGT']
...

this script will summarize columns per first key column;


awk '{ key[$1]=$1; col1[$1]+=$2; col2[$1]+=$3; col3[$1]+=$4; col4[$1]+=$5; }
END{ for(x in key) print x, col1[x], col2[x], col3[x],...

awk '{n=split($2,a,"_");split($3,b,"_");for (i=1;i<=n;i++) print $1,a[i],b[i]}' file

Slight improvement - ensure zero counts are printed, no need to call external sort:

awk '{a[int($2/10)]++}END{while(++i<11) print i*10-9 "-" i*10, 0+a[i-1]}' infile

awk '{a[int($2/10)*10]++}END{for (i in a) print i "-" i+10, a[i]|"sort -n"}' infile

Some updates based on Chubler_XL's code below

awk '{a[int($2/10)*10]++}END{for (i=0;i<100;i+=10) print i+1...