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Hello Paolo,

Could you please try following and let me know if this helps you.

awk 'BEGIN{for(i=1;i<=ARGC;i++){O=O?O OFS ARGV[i]:ARGV[i]};print O} FNR==NR{A[$1]=$0;next} ($1 in A){print A[$1]...

just add them at the end (file[12] expands to file1 file2). Why don't you try *UCSC* or mayhap a subset of those.

try

awk 'NR==FNR{a[$0]++;next}{if ($0 in a){print $0,a[$0]} else {print $0,0}}' file B file A

$ awk 'FNR==NR{ A[$1]++; next}{ print $1 , A[$1]+0 }' fileB fileA

Could this help you ?
awk '{ print > int($2/1000)+1"_distance.txt"}' filename

Try:awk 'NR==FNR{a[$1]=$2;next}$1 in a{$0=$0" - "a[$1]" = "($2-a[$1])}1' FileB FileA

Not in the exact format, but does the job:
join -a1 fileA fileB | awk '{if($3 != ""){print $0, $2-$3}else{print}}'

Hello,

with grep:
grep -v '^[^[:space:]]*\([[:space:]]*0\)*$' file

Regards.

Try this,
awk '/^chrom/{split($1,a,"=");split($2,b,"=");next} { printf "%s\t%10d\t%10d\t%f\n",a[2],b[2],b[2]+1,$1;b[2]++}' filename

awk 'NR==1 { print ; T=$1; next } $1=="" { print ; getline ; print ; T=$1 ; next } { $(NF+1)=T } 1' inputfile