bio::graphics::glyph::heat_map_ideogram(3pm) [debian man page]
Bio::Graphics::Glyph::heat_map_ideogram(3pm) User Contributed Perl Documentation Bio::Graphics::Glyph::heat_map_ideogram(3pm)NAME
Bio::Graphics::Glyph::heat_map_ideogram - The "heat_map_ideogram" glyph
SYNOPSIS
See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.
DESCRIPTION
This glyph draws a chromosome ideogram using scored features instead of cytobands. It is a hybrid of the heat_map and ideograms glyphs and
accepts options for both. A typical usage would be to pair this glyph with an aggregator that groups scored features such as blast hits or
gene_density bins, etc with a centromere. The result is a chromosome ideogram that has bands whose colors vary porportionate to the
feature score.
OPTIONS
See Bio::Graphics::Glyph for a full explanation of standard options.
See Bio::Graphics::Glyph::heat_map for an explanation of heat_map options.
See Bio::Graphics::Glyph::ideogram for an explanation of ideogram options.
BUGS
Please report them.
SEE ALSO
Bio::Graphics::Panel, Bio::Graphics::Glyph, Bio::DB::GFF, Bio::SeqI, Bio::SeqFeatureI, Bio::Das, GD
AUTHOR
Sheldon McKay <mckays@cshl.edu>
Copyright (c) 2006 Cold Spring Harbor Laboratory
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for
disclaimers of warranty.
perl v5.14.2 2012-02-20 Bio::Graphics::Glyph::heat_map_ideogram(3pm)
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Bio::Graphics::Glyph::toomany(3pm) User Contributed Perl Documentation Bio::Graphics::Glyph::toomany(3pm)NAME
Bio::Graphics::Glyph::toomany - The "too many to show" glyph
SYNOPSIS
See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.
DESCRIPTION
This glyph is intended for features that are too dense to show properly. Mostly a placeholder, it currently shows a filled oval. If you
choose a bump of 0, the ovals will overlap, to give a cloud effect.
OPTIONS
There are no glyph-specific options.
BUGS
Please report them.
SEE ALSO
Bio::Graphics::Panel, Bio::Graphics::Glyph, Bio::Graphics::Glyph::arrow, Bio::Graphics::Glyph::cds, Bio::Graphics::Glyph::crossbox,
Bio::Graphics::Glyph::diamond, Bio::Graphics::Glyph::dna, Bio::Graphics::Glyph::dot, Bio::Graphics::Glyph::ellipse,
Bio::Graphics::Glyph::extending_arrow, Bio::Graphics::Glyph::generic, Bio::Graphics::Glyph::graded_segments,
Bio::Graphics::Glyph::heterogeneous_segments, Bio::Graphics::Glyph::line, Bio::Graphics::Glyph::pinsertion, Bio::Graphics::Glyph::primers,
Bio::Graphics::Glyph::rndrect, Bio::Graphics::Glyph::segments, Bio::Graphics::Glyph::ruler_arrow, Bio::Graphics::Glyph::toomany,
Bio::Graphics::Glyph::transcript, Bio::Graphics::Glyph::transcript2, Bio::Graphics::Glyph::translation, Bio::Graphics::Glyph::triangle,
Bio::DB::GFF, Bio::SeqI, Bio::SeqFeatureI, Bio::Das, GD
AUTHOR
Allen Day <day@cshl.org>.
Copyright (c) 2001 Cold Spring Harbor Laboratory
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for
disclaimers of warranty.
perl v5.14.2 2012-02-20 Bio::Graphics::Glyph::toomany(3pm)