BP_DBSPLIT(1p) User Contributed Perl Documentation BP_DBSPLIT(1p)NAME
dbsplit - script to split an input set of database(s) into smaller pieces
SYNOPSIS
dbsplit.PLS --size 50 [-i inputfile] [-if inputformat] [-of outputformat]
[--prefix outputprefix] [ < file1 file 2 OR file1 file2]
DESCRIPTION
This script will take as input a list of filenames or a single file or from STDIN a sequence database and split the database into separate
files of X numbers of sequences. You specify X with the "--size/-s" parameter. The input and output sequence format is any that is
supported by bioperl (fasta,embl,genbank,gcg, swissprot, etc).
You can specify the input data either as a single file with -i filename, or as a single file as an argument like
% dbsplit file1 file2
or as a list of sequence data with
% cat file1 file2 file3 | dbsplit
You'll want to use the "--prefix" to specify what the output prefix will be.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR
Jason Stajich, jason-at-bioperl-dot-org
perl v5.14.2 2012-03-02 BP_DBSPLIT(1p)
Check Out this Related Man Page
BP_PARSE_HMMSEARCH(1p) User Contributed Perl Documentation BP_PARSE_HMMSEARCH(1p)NAME
parse_hmmsearch - parse single/multiple HMMSEARCH results file(s) with
different output options
SYNOPSIS
parse_hmmsearch [--po] [--ps] -s hmmsearch_file
parse_hmmsearch [--po] [--ps] -m index_file
DESCRIPTION
Mandatory Options:
-s HMMSEARCH file to parse.
-m INDEX file that contains a list of HMMSEARCH files for multiple
parsing.
Special Options:
--po Print only the hits that have positive scores.
--ps Print the total of positive scores found.
--help Show this documentation.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR
Mauricio Herrera Cuadra <mauricio at open-bio.org>
perl v5.14.2 2012-03-02 BP_PARSE_HMMSEARCH(1p)
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