xmakemol(1) [debian man page]

xmakemol(1)															       xmakemol(1)

NAME

       XMakemol - A program for visualizing atomic and molecular systems.

SYNOPSIS

       xmakemol [options]

DESCRIPTION

       XMakemol is a program for viewing and manipulating atomic and molecular systems.
       XMakemol  is  a mouse-based application and many features can be accessed by clicking or dragging the mouse on the main window.	Additional
       popup dialogs offer a number of additional features.

OPTIONS

       -a     Switch off atoms.

       -b     Switch off bonds.

       -h     Switch on hydrogen bonds.

       -c     Set the canvas colour.

       -e     Set the bounding box colour.

       -f     Read file on startup (use '-f -' for STDIN).

       -G     Switch off GL rendering.

       -u     Print usage information.

       -v     Print version information.

FILES

       /usr/share/xmakemol/elements List of element properties.

ENVIRONMENT VARIABLES

       XM_ELEMENTS
	      Specifies an alternative location for the elements file.

EXAMPLES

       To run this program the standard way type:

       xmakemol -f <filename>

AUTHOR

       Matthew P. Hodges <matt@tc.bham.ac.uk>

XMakemol							     May 2004							       xmakemol(1)

JMOL(1) 						      General Commands Manual							   JMOL(1)

NAME

       jmol - 3D molecule and crystal viewer

SYNOPSIS

       jmol [options] [file]

DESCRIPTION

       jmol is a program that is able to view 3D chemical information like molecular structures, vibrations of bonds or animations.

OPTIONS

       Currently accepted options are:

       -h, --help
	      Print help on the command line options.

       -g WIDTHxHEIGHT, --geometry WIDTHxHEIGHT
	      Use window-geometry WIDTH x HEIGHT.

       -s scriptfile, --script scriptfile
	      Run script scriptfile.

       -Dproperty=value
	      Use value for the given property (for a list see below).

       -Dcdk.debugging=booelan
	      Set debugging (default: false).

       -Dcdk.debug.stdout=boolean
	      Set debug to stdout (default: false).

       -Duser.language=LANG
	      Set user language (default: EN).

       -Ddisplay.speed=fps|ms
	      Set display speed in milli seconds (ms) or frames per second (fps) (default: ms).

       -DJmolConsole=boolean
	      Start with Jmol-console (default: true).

       -Dplugin.dir=path
	      Set  path to plugin directory (default: unset). By calling the shell wrapper /usr/bin/jmol, the directory is set to /usr/share/jmol.
	      Plugins installed to ~/.jmol/plugins are automatically detected.

FILES

       ~/.jmol/plugins
	      Per-user plugin directory.

SEE ALSO

       More information about JMol can be found at http://jmol.sourceforge.net/ and in /usr/share/doc/jmol/html (User-Guide).

AUTHORS

       This manual page was written by Egon Willighagen <egonw@users.sourceforge.net> and Daniel Leidert <daniel.leidert@wgdd.de> for  the  Debian
       GNU/Linux distribution (but may be used by others).

								  August 21, 2004							   JMOL(1)