ITKSNAP(1) User Commands ITKSNAP(1)NAME
itksnap - semi-automatic segmentation of structures in 3D images
SYNOPSIS
itksnap [options] [grey_image]
DESCRIPTION
SNAP provides semi-automatic segmentation of structures in medical images (e.g. magnetic resonance images of the brain) using active con-
tour methods, as well as manual delineation and image navigation. Noteworthy features are:
* Linked cursor for seamless 3D navigation
* Manual segmentation in three orthogonal planes at once
* Support for many different 3D image formats, including NIfTI
* Support for concurrent, linked viewing and segmentation of multiple images
* Limited support for color images (e.g., diffusion tensor maps)
* 3D cut-plane tool for fast post-processing of segmentation results
OPTIONS --grey, -g FILE
Load greyscale image FILE (optional)
--segmentation, -s FILE
Load segmentation image FILE
--labels, -l FILE
Load label description file FILE
--rgb FILE
Load RGB image FILE (as overlay if combined with -g)
AUTHOR
ITK-SNAP was written by Paul A. Yushkevichi, Hui Zhang, Casey Goodlett, Timothy Burke, Nicholas Tustison, Guido Gerig, Silvio Turello,
Joachim Schlegel, Gabor Szekely, Chris Wynn, Arun Neelamkavil, David Gregg, Eric Larsen, Sanjay Sthapit, Sean Ho, Ashraf Farrag, Amy Hen-
derson, Robin Munesato, Ming Yu, Nathan Moon, Thorsten Scheuermann, Konstantin Bobkov, Nathan Talbert, Yongjik Kim, Pierre Fillard, Daniel
S. Fritsch, Stephen R. Aylward
This manual page was written by Michael Hanke <michael.hanke@gmail.com>, for the Debian project (but may be used by others).
SEE ALSO
Manual and tutorial: http://itksnap.org
Michael Hanke April 2010 ITKSNAP(1)
Check Out this Related Man Page
BLOCKDIAG(1) General Commands Manual BLOCKDIAG(1)NAME
blockdiag - generate block-diagram image file from spec-text file.
SYNOPSIS
blockdiag [options] file
DESCRIPTION
This manual page documents briefly the blockdiag commands.
blockdiag is a program that generate block-diagram image file from spec-text file.
OPTIONS
These programs follow the usual GNU command line syntax, with long options starting with two dashes (`-'). A summary of options is
included below. For a complete description, see the SEE ALSO.
--version
show program's version number and exit
-h, --help
Show summary of options
-a, --antialias
Pass diagram image to anti-alias filter
-c FILE, --config=FILE
read configurations from FILE
-o FILE
write diagram to FILE
-f FONT, --font=FONT
use FONT to draw diagram
--fontmap=FONT
use FONTMAP file to draw diagram
-s, --separate
Separate diagram images for each group
-T TYPE
Output diagram as TYPE format
--nodoctype
Do not output doctype definition tags (SVG only)
--no-transparency
do not make transparent background of diagram (PNG only)
SEE ALSO
The programs are documented fully by
http://tk0miya.bitbucket.org/blockdiag/build/html/index.html
AUTHOR
blockdiag was written by Takeshi Komiya <i.tkomiya@gmail.com>
This manual page was written by Kouhei Maeda <mkouhei@palmtb.net>, for the Debian project (and may be used by others).
May 9, 2011 BLOCKDIAG(1)
sometimes for this code i get a segmentation fault for codes llike this
:
int main{
int * a= 0;
int b;
a = (int*)malloc(sizeof(int));
///some code using these variable but no freeing of a
if(a){
free(a);
a = 0;
}
return... (3 Replies)
ive written my code in C for implementation of a simple lexical analyser using singly linked list hence am making use of dynamic allocation,but when run in linux it gives a segmentation fault is it cause of the malloc function that ive made use of????any suggestions as to what i could do???
thank... (8 Replies)
helo,
i m using linux operationg system at both client and server side.
Now in my application when i use ntohl() then it will give segmentation fault.
now when i remove nothl(), then it works fine.
can u tell me why this happen.
amit (8 Replies)
Hi,
Why I don't receive a segmentation fault in the following sample.
int main(void)
{
char buff;
sprintf(buff,"Hello world");
printf("%s\n",buff);
}
If I define a buffer of 10 elements and I'm trying to put inside it twelve elements, Should I receive a sigsev... (22 Replies)
If I do this.
Assume
struct life
{
char *nolife;
}
struct life **life;
// malloc initialization & everything
if(life->nolife == 0)
Would I get error at life->nolife if it is equal to 0.
wrong accession? (3 Replies)
Anyone as a clue why my program returns a segmentation fault on Ubuntu but not on Gentoo? I dumped the core and check the output through gdb.
The whole program run fine all the way down and does what its suposed to do up till where its suposed to exit then it crash to segmentation fault instead... (4 Replies)
Hi,
I am having this segmentation fault not in the following program, bt. in my lab program . My lab program is horrible long so cannot post it here bt. I am using the following logic in my program which is giving the segmentation fault. Bt. if I run this sample program as it is it dosen't give... (3 Replies)
Why this is happening when both of them compiled together and run?
I am getting segmentation fault SIGSEGV.
File1.c:
int arr;
File2.c:
extern int *arr;
int main() {
arr = 100;
} (3 Replies)
Hey guys I am reading a file in c that has a record like this:
1002:credit card:c:500.000000
2002:cred:d:200.000000
I am trying to read the file like this but I am getting a segmentation fault. Any ideas why?
while (fscanf(fp1, "%d:%:%c:%lf\n",&accountnumb,mainname,&type,&transactionc) !=... (4 Replies)
This code is causing a segmentation fault and I can't figure out why. I'm new to UNIX and I need to learn how to avoid this segmentation fault thing. Thank you so much. Thanks also for the great answers to my last post.:):b:
int main()
{
mysqlpp::Connection conn(false);
if... (3 Replies)
Hi, The following code reads 20 characters from one file and writes them (appends them) to the other file. The code works in Turbo C++ on windows but it shows segmentation fault on Linux. I am using Ubuntu 10.10 and gcc compiler.
Please tell me where I was wrong.
#include<stdio.h>
void... (6 Replies)
hi
I have a method which returns char*. In this method am using switch case. I am getting segmentation error in case 49 and my code is
case 49:
if(intFlag == 0210)
{
iiIDCode = atoi(getsubstring(sReq,262,2));
l =... (7 Replies)
Oddities with gcc, 2.95.3 for the AMIGA and 4.2.1 for MY current OSX 10.14.1...
I am creating a basic calculator for the AMIGA ADE *NIX emulator in C as it does not have one.
Below are two very condensed snippets of which I have added the results inside the each code section.
IMPORTANT!... (11 Replies)
Apologies for any typos...
Well guys, been researching 'goto' in C and they say that you can't 'goto' labels in another function as a segmentation fault will occur.
However I have found a way to 'goto' a label in another function that is NOT main() using the asm() function.
As you know I... (14 Replies)