itksnap(1) [debian man page]
ITKSNAP(1) User Commands ITKSNAP(1) NAME
itksnap - semi-automatic segmentation of structures in 3D images SYNOPSIS
itksnap [options] [grey_image] DESCRIPTION
SNAP provides semi-automatic segmentation of structures in medical images (e.g. magnetic resonance images of the brain) using active con- tour methods, as well as manual delineation and image navigation. Noteworthy features are: * Linked cursor for seamless 3D navigation * Manual segmentation in three orthogonal planes at once * Support for many different 3D image formats, including NIfTI * Support for concurrent, linked viewing and segmentation of multiple images * Limited support for color images (e.g., diffusion tensor maps) * 3D cut-plane tool for fast post-processing of segmentation results OPTIONS
--grey, -g FILE Load greyscale image FILE (optional) --segmentation, -s FILE Load segmentation image FILE --labels, -l FILE Load label description file FILE --rgb FILE Load RGB image FILE (as overlay if combined with -g) AUTHOR
ITK-SNAP was written by Paul A. Yushkevichi, Hui Zhang, Casey Goodlett, Timothy Burke, Nicholas Tustison, Guido Gerig, Silvio Turello, Joachim Schlegel, Gabor Szekely, Chris Wynn, Arun Neelamkavil, David Gregg, Eric Larsen, Sanjay Sthapit, Sean Ho, Ashraf Farrag, Amy Hen- derson, Robin Munesato, Ming Yu, Nathan Moon, Thorsten Scheuermann, Konstantin Bobkov, Nathan Talbert, Yongjik Kim, Pierre Fillard, Daniel S. Fritsch, Stephen R. Aylward This manual page was written by Michael Hanke <michael.hanke@gmail.com>, for the Debian project (but may be used by others). SEE ALSO
Manual and tutorial: http://itksnap.org Michael Hanke April 2010 ITKSNAP(1)
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HOCR(1) User Commands HOCR(1) NAME
hocr - Hebrew OCR utility DESCRIPTION
Usage: hocr [OPTION...] - Hebrew OCR utility Help Options: -?, --help Show help options --help-all Show all help options --help-file Show file options --help-image-proccesing Show image proccesing options --help-segmentation Show segmentation options --help-debug Show debug options File options -O, --images-out-path=PATH use PATH for output images -u, --data-out=FILE use FILE as output data file name -C, --save-copy save a compy of original image -b, --save-bw save proccesd bw image -B, --save-bw-exit save proccesd bw image and exit -l, --save-layout save layout image -L, --save-layout-exit save layout image and exit -f, --save-fonts save fonts -F, --save-fonts-exit save fonts images and exit Image proccesing options -T, --thresholding-type=NUM thresholding type, 0 normal, 1 none, 2 fine -t, --threshold=NUM use NUM as threshold value, 1..100 -a, --adaptive-threshold=NUM use NUM as adaptive threshold value, 1..100 -s, --scale=SCALE scale input image by SCALE 1..9, 0 auto -S, --no-auto-scale do not auto acale image -q, --rotate=DEG rotate image clockwise in deg. -Q, --no-auto-rotate do not auto rotate image Segmentation options -c, --colums setup=NUM colums setup: 1.. #colums, 0 auto, 255 free -x, --slicing=NUM use NUM as font slicing threshold, 1..250 -X, --slicing-width=NUM use NUM as font slicing width, 50..250 -w, --font-spacing=NUM font spacing: tight ..-1, 0, 1.. spaced Debug options -g, --draw-grid draw grid on output images -d, --debug print debuging information while running -D, --debug-extra print extra debuging information -y, --font-filter=NUM debug a font filter, use filter NUM -Y, --font-filter-list print a list of debug a font filters -j, --font-num-out print font numbers in output text Application Options: -i, --image-in=FILE use FILE as input image file name -o, --text-out=FILE use FILE as output text file name -h, --html-out output text in html format -N, --no-gtk do not use gtk for file input and output -z, --font=NUM use font NUM -n, --no-nikud do not recognize nikud -v, --version print version information and exit libhocr-0.10.5-i686-pc-linux-gnu-12022008 http://hocr.berlios.de Copyright (C) 2005-2008 Yaacov Zamir <kzamir@walla.co.il> This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MER- CHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>. SEE ALSO gocr(1), ocrad(1), unpaper(1) hocr - Hebrew OCR utility February 2008 HOCR(1)