PC-PROJECT(1) Probcons Manual PC-PROJECT(1)NAME
pc-project - Program to project multiple alignment to pairwise alignments.
SYNOPSIS
pc-project [ALIGNMENT] [-nocompressgaps]
NOTE
pc-project is named project in the original sources, but has been remamed to avoid collision with other program names.
SEE ALSO pc-makegnufile(1), pc-compare(1),from the probcons-extra package, and probcons(1) and probcons-RNA(1) from the probcons package.
REFERENCE
Please cite Do, C.B., Mahabhashyam, M.S.P., Brudno, M., and Batzoglou, S. 2005. PROBCONS: Probabilistic Consistency-based Multiple Sequence
Alignment. Genome Research 15: 330-340.
AUTHORS
Chuong Do <chuongdo@cs.stanford.edu>
Wrote probcons in collaboration with Michael Brudno in the research group of Serafim Batzoglou, Department of Computer Science,
Stanford University.
Charles Plessy <charles-debian-nospam@plessy.org>
Wrote this manpage in DocBook XML for the Debian distribution.
COPYRIGHT
This program and its manpage are in the public domain.
pc-project 1.12 2007-04-04 PC-PROJECT(1)
Check Out this Related Man Page
PROBCONS-RNA(1) Probcons Manual PROBCONS-RNA(1)NAME
probcons-RNA - An experimental version of ProbCons compiled with parameters estimated via unsupervised training on BRAliBASE.
DESCRIPTION
See the manpage of probcons(1) for the command-line arguments, and /usr/share/doc/README.Debian for more informations about how
probcons-RNA has been built.
SEE ALSO
o You can find more information in the manual of ProbCons, which is located in /usr/share/doc/probcons/manual.pdf in Debian systems.
o probcons(1), pc-makegnufile(1), pc-compare(1), pc-project(1), which are distributed separately in the probcons-extra package.
AUTHORS
Chuong Do <chuongdo@cs.stanford.edu>
Wrote probcons in collaboration with Michael Brudno in the research group of Serafim Batzoglou, Department of Computer Science,
Stanford University.
Charles Plessy <charles-debian-nospam@plessy.org>
Wrote this manpage in DocBook XML for the Debian distribution.
COPYRIGHT
This program and its manpage are in the public domain.
probcons-RNA 1.12 2007-04-04 PROBCONS-RNA(1)
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