NPS2GPS(1) General Commands Manual NPS2GPS(1)
NAME
nps2gps - convert nucleotide-protein sets to ASN.1 genomic product sets
SYNOPSIS
nps2gps [-] [-D] [-F] [-G str] [-L] [-N] [-P] [-Q] [-R] [-T] [-U] [-f str] [-i filename] [-o filename] [-p path] [-r path] [-x str]
DESCRIPTION
nps2gps converts NCBI Bioseq-sets from simple nucleotide-protein sets to full genomic product sets complete with mRNA transcripts, which it
outputs as text ASN.1.
OPTIONS
A summary of options is included below.
- Print usage message
-D RefSeq mRNA Titles
-F Map by Feature ID
-G str General ID database name
-L Lock components in advance
-N Promote Non-coding RNAs
-P mRNA ID from Protein
-Q Special mRNA titles
-R Enable Remote fetching from ID
-T Map by Transcript ID
-U Remove Unnecessary gene cross-references
-f str Substring filter
-i filename
Single input file (default = stdin)
-o filename
Single output file (default = stdout)
-p path
Path to files for batch conversion
-r path
Path for results of batch conversion
-x str File selection suffix for batch conversion (default = .ent)
AUTHOR
The National Center for Biotechnology Information.
SEE ALSO
asn2asn(1), asn2ff(1), asn2gb(1), asn2xml(1), asndhuff(1).
NCBI Tools User's Manual 2012-06-24 NPS2GPS(1)
