Patent Title: Event Handling System

 
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Old 07-19-2009
Patent Title: Event Handling System

Tim Bass
07-19-2009 01:43 PM


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Bio::MapIO(3pm) 					User Contributed Perl Documentation					   Bio::MapIO(3pm)

NAME
Bio::MapIO - A Map Factory object SYNOPSIS
use Bio::MapIO; my $mapio = Bio::MapIO->new(-format => "mapmaker", -file => "mapfile.map"); while( my $map = $mapio->next_map ) { # get each map foreach my $marker ( $map->each_element ) { # loop through the markers associated with the map } } DESCRIPTION
This is the Factory object for reading Maps from a data stream or file. FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted the web: https://redmine.open-bio.org/projects/bioperl/ AUTHOR - Jason Stajich Email jason@bioperl.org APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ new Title : new Usage : my $obj = Bio::MapIO->new(); Function: Builds a new Bio::MapIO object Returns : Bio::MapIO Args : Bio::Factory::MapFactoryI methods next_map Title : next_tree Usage : my $map = $factory->next_map; Function: Get a map from the factory Returns : L<Bio::Map::MapI> Args : none write_map Title : write_tree Usage : $factory->write_map($map); Function: Write a map out through the factory Returns : none Args : L<Bio::Map::MapI> attach_EventHandler Title : attach_EventHandler Usage : $parser->attatch_EventHandler($handler) Function: Adds an event handler to listen for events Returns : none Args : L<Bio::Event::EventHandlerI> _eventHandler Title : _eventHandler Usage : private Function: Get the EventHandler Returns : L<Bio::Event::EventHandlerI> Args : none _load_format_module Title : _load_format_module Usage : *INTERNAL MapIO stuff* Function: Loads up (like use) a module at run time on demand Example : Returns : Args : _guess_format Title : _guess_format Usage : $obj->_guess_format($filename) Function: Example : Returns : guessed format of filename (lower case) Args : perl v5.14.2 2012-03-02 Bio::MapIO(3pm)