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Full Discussion: Executing mpirun commands
Top Forums Shell Programming and Scripting Executing mpirun commands Post 47453 by tesswulf on Wednesday 11th of February 2004 02:57:24 AM
Old 02-11-2004
Executing mpirun commands

Basically, I would like to run an mpirun query on my web server to query your databases via yours when using the BLAST program, however the server seems not able to execute even basic mpirun programs such as cpi (to calculate pi). Are there any settings I should take note of?

I am running Perl CGI scripts via the Apache v1.3.28 server in a Unix environment, is there settings that should be taken care of when running command line in this particular case for mpirun (the script alias has already been set up - ScriptAliasMatch .../cgi-bin/... /usr/users/$1/public_html/cgi-bin/$2) :

The line in Perl script is :
`/usr/local/apps/mpich/bin/mpirun -machinefile /usr/users/utess/machines.ALPHA -np 2 /usr/local/apps/mpich/examples/cpi -o /usr/local/d.txt 2> /usr/local/err.txt`;

The relevant error is :
/usr/local/apps/mpich/bin/mpirun: pwd: read error in ..
/usr/local/apps/mpich/bin/mpirun: test: argument expected

Is there anything that should be taken care of when running scripts of this nature? Even when "nobody" user account has been set to a writable directory such that I could execute the command in "nobody"'s account I still could not execute the command via Perl script.

Is it a problem with the server configuration since "nobody"'s account can execute the command?

I really would appreciate any help.
 

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Plack::Handler::CGI(3pm)				User Contributed Perl Documentation				  Plack::Handler::CGI(3pm)

NAME
Plack::Handler::CGI - CGI handler for Plack SYNOPSIS
Want to run PSGI application as a CGI script? Rename .psgi to .cgi and change the shebang line like: #!/usr/bin/env plackup # rest of the file can be the same as other .psgi file You can alternatively create a .cgi file that contains something like: #!/usr/bin/perl use Plack::Loader; my $app = Plack::Util::load_psgi("/path/to/app.psgi"); Plack::Loader->auto->run($app); This will auto-recognize the CGI environment variable to load this class. If you really want to explicitly load the CGI handler, you can. For instance you might do this when you want to embed a PSGI application server built into CGI-compatible perl-based web server: use Plack::Handler::CGI; Plack::Handler::CGI->new->run($app); DESCRIPTION
This is a handler module to run any PSGI application as a CGI script. UTILITY METHODS
setup_env() my $env = Plack::Handler::CGI->setup_env(); my $env = Plack::Handler::CGI->setup_env(\%override_env); Sets up the PSGI environment hash for a CGI request from %ENV> and returns it. You can can provide a hashref of key/value pairs to override the defaults if you would like. SEE ALSO
Plack perl v5.14.2 2011-06-22 Plack::Handler::CGI(3pm)
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