06-17-2003
what about file3?
Thanks! I want to put the new file2 (with the lines already deleted) into a new file3. Also, I need to make sure $WORD is at the beginning of the line. I tried the below but got an empty file3.
while read WORD
do
sed '/$WORD/d' file2 > file3
done < file1
Any suggestions?
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hi guys,
Can you help me in solving ths problem?
I have two files file1 and file2 as following:
===FILE1====
>LOC21
MASSKFCTVLSLALFLVLLTHANSAELFSFNFQTFNAANLILQGNASVSSSGQLRLTEVKSNGEPKVASL
VASFATAFTFNILAPILSNSADGLAFALVPVGSQPKFNGGFLGLFQNVTYDP
>LOC05... (11 Replies)
Discussion started by: smriti_shridhar
11 Replies
2. Shell Programming and Scripting
Hi All,
as you can see I'm pretty new to this board. :D
I'm struggling around with small script to search a few fields in another file.
Basically I have file1 looking like this:
15:38:28 sz:10001 pr:14.16
15:38:28 sz:10002 pr:18.41
15:38:29 sz:10003 pr:19.28
15:38:30 sz:10004... (1 Reply)
Discussion started by: floripoint
1 Replies
3. Shell Programming and Scripting
Hi there,
I know the command diff but what I want is slightly different.
I have two files containing lines that look like md5sums.
file1
5a1e8cee2eb2157c86e7266ee38e47c3 /tmp/file1
a254c48bdd064a40b82477b9fa5be05d /tmp/file2
2d57c72ec898acddf8a6bacb3f821572 /tmp/file3... (5 Replies)
Discussion started by: chebarbudo
5 Replies
4. Shell Programming and Scripting
Hi All,
I have to arrange one of the text file by deleting specific lines.
cat file1.txt
3595 3595 -0.00842773 -0.0085077 0.00368851
12815 12815 -0.00929239 0.00439785 0.0291697
3747 3747 -0.00974353 0.00228922 0.0225058
3574 3574 -0.00711399 -0.00315748 0.0141206
....
12734... (7 Replies)
Discussion started by: senayasma
7 Replies
5. Shell Programming and Scripting
Hello,
I have two data files:
file1
12345 aa bbb cccc
98765 qq www uuuu
76543 pp rrr bbbbb
34567 nn ccc sssss
87654 qq ppp rrrrr
file2
98765
34567
I need to remove the lines from file1 if the first field contains a value that appears in file2:
output
12345 aa bbb cccc
76543 pp... (2 Replies)
Discussion started by: palex
2 Replies
6. UNIX for Dummies Questions & Answers
I have very limited coding skills but I'm wondering if someone could help me with this. There are many threads about matching strings in two files, but I have no idea how to add a column from one file to another based on a matching string.
I'm looking to match column1 in file1 to the number... (3 Replies)
Discussion started by: pathunkathunk
3 Replies
7. Shell Programming and Scripting
I have 2 files with 7 fields and i want to print the lines which is present in file1 but not in file2 based on field1 and field2.
Logic: I want to print all the lines, where there is a particular column1 and column2. And we do not find the set of column1 and column2 in file2.
Example: "sc2/10... (3 Replies)
Discussion started by: NamS
3 Replies
8. Shell Programming and Scripting
I have two files.
File 1 is a two-column index file, e.g.
comp11084_c0_seq6:130-468(-) comp12746_c0_seq3:140-478(+)
comp11084_c0_seq3:201-539(-) comp12746_c0_seq2:191-529(+)
File 2 is a sequence file with headers named with the same terms that populate file 1. ... (1 Reply)
Discussion started by: pathunkathunk
1 Replies
9. Shell Programming and Scripting
Hi,
I am running my pipeline and capturing all stout from multiple programs to a .txt file. I want to go into that .txt file and search for specific lines, and finally print those lines in a second .txt file.
I can do this using grep, awk, or sed for each line, but have not been able to get... (2 Replies)
Discussion started by: hmortens
2 Replies
10. UNIX for Dummies Questions & Answers
I want to print only the lines in file2 that match file1, in the same order as they appear in file 1
file1
file2
desired output:
I'm getting the lines to match
awk 'FNR==NR {a++}; FNR!=NR && a' file1 file2
but they are in sorted order, which is not what I want:
Can anyone... (4 Replies)
Discussion started by: pathunkathunk
4 Replies
diff3(1) General Commands Manual diff3(1)
Name
diff3 - 3-way differential file comparison
Syntax
diff3 [-ex3] file1 file2 file3
Description
The command compares three versions of a file, and publishes the ranges of text that disagree, flagged with the following codes:
==== all three files differ
====1 file1 is different
====2 file2 is different
====3 file3 is different
The type of change needed to convert a given range of a given file to some other is indicated in one of these ways:
f : n1 a Text is to be appended after line number n1 in file f, where f = 1, 2, or 3.
f : n1 , n2 c
Text is to be changed in the range line n1 to line n2. If n1 = n2, the range may be abbreviated to n1.
The original contents of the range follows immediately after a c indication. When the contents of two files are identical, the contents of
the lower-numbered file is suppressed.
Options
-3 Produces an editor script containing the changes between file1 and file2 that are to be incorporated into file3.
-e Produces an editor script containing the changes between file2 and file3 that are to be incorporated into file1.
-x Produces an editor script containing the changes among all three files.
Examples
Under the -e option, publishes a script for the editor that incorporates into file1 all changes between file2 and file3 - that is, the
changes that would normally be flagged ==== and ====3. Option -x (-3) produces a script to incorporate only changes flagged ==== (====3).
The following command applies the resulting script to `file1':
(cat script; echo '1,$p') | ed - file1
Restrictions
Text lines that consist of a single `.' defeat -e.
Files
/tmp/d3?????
/usr/lib/diff3
See Also
cmp(1), comm(1), diff(1), dffmk(1), join(1), sccsdiff(1), uniq(1)
diff3(1)