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Top Forums UNIX for Beginners Questions & Answers awk to print percent based on vales in file Post 303044639 by cmccabe on Friday 28th of February 2020 02:40:52 PM
Old 02-28-2020
awk to print percent based on vales in file

Trying to use awk to calulate a percent based on the count of each matching $5 in file divided by the count of each $7 that is greater than or = to 20. The portion of code before the first | gets the count of the matching $5, then the next portion before the second | gets the count of each $7 that is greater than or = to 20. The last part gets the overall %. The awk does execute, but no output results and there probably is a bette way and hope my logic makes sense . Thank you Smilie.

file
Code:
chr1	1787320	1787324	chr1:1787320-1787324	GNB1_1	1	394
chr1	1787320	1787324	chr1:1787320-1787324	GNB1_1	2	398
chr1	1787320	1787324	chr1:1787320-1787324	GNB1_1	3	17
chr1	1787320	1787324	chr1:1787320-1787324	GNB1_1	4	19
chr7	99203095	99203098	chr7:99203095-99203098	KPNA7_9	66	12
chr7	99203095	99203098	chr7:99203095-99203098	KPNA7_9	67	2
chr7	99203095	99203098	chr7:99203095-99203098	KPNA7_9	68	0
chrX	154370862	154370864	chrX:154370862-154370864	FLNA_26	375	0
chrX	154370862	154370864	chrX:154370862-154370864	FLNA_26	376	0

desired
Code:
GNB1_1	4 2 50.0%
KPNA7_9 3 2 33.3%
FLNA_26 2 0 0.0%

awk
Code:
awk -F '\t' '{c[$5]++}
END{
for (i in c) printf("%s\t%s\n",i,c[i])
}' file | awk 'count[$5]==""{ count[$5]=0 } 
            $7 <= 20{ count[$5]++} 
END{
              for(k in count) 
                 printf "%s %d\n",  k, count[k]
}' | awk '{A[$1]=$2;next} ($1 in A){X=(A[$1]/$3)*100;printf("%s %.1f\n",$1,  100-X)}' > output

 

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Devel::Refcount(3pm)					User Contributed Perl Documentation				      Devel::Refcount(3pm)

NAME
"Devel::Refcount" - obtain the REFCNT value of a referent SYNOPSIS
use Devel::Refcount qw( refcount ); my $anon = []; print "Anon ARRAY $anon has " . refcount($anon) . " reference "; my $otherref = $anon; print "Anon ARRAY $anon now has " . refcount($anon) . " references "; DESCRIPTION
This module provides a single function which obtains the reference count of the object being pointed to by the passed reference value. FUNCTIONS
$count = refcount($ref) Returns the reference count of the object being pointed to by $ref. COMPARISON WITH SvREFCNT This function differs from "Devel::Peek::SvREFCNT" in that SvREFCNT() gives the reference count of the SV object itself that it is passed, whereas refcount() gives the count of the object being pointed to. This allows it to give the count of any referent (i.e. ARRAY, HASH, CODE, GLOB and Regexp types) as well. Consider the following example program: use Devel::Peek qw( SvREFCNT ); use Devel::Refcount qw( refcount ); sub printcount { my $name = shift; printf "%30s has SvREFCNT=%d, refcount=%d ", $name, SvREFCNT($_[0]), refcount($_[0]); } my $var = []; printcount 'Initially, $var', $var; my $othervar = $var; printcount 'Before CODE ref, $var', $var; printcount '$othervar', $othervar; my $code = sub { undef $var }; printcount 'After CODE ref, $var', $var; printcount '$othervar', $othervar; This produces the output Initially, $var has SvREFCNT=1, refcount=1 Before CODE ref, $var has SvREFCNT=1, refcount=2 $othervar has SvREFCNT=1, refcount=2 After CODE ref, $var has SvREFCNT=2, refcount=2 $othervar has SvREFCNT=1, refcount=2 Here, we see that SvREFCNT() counts the number of references to the SV object passed in as the scalar value - the $var or $othervar respectively, whereas refcount() counts the number of reference values that point to the referent object - the anonymous ARRAY in this case. Before the CODE reference is constructed, both $var and $othervar have SvREFCNT() of 1, as they exist only in the current lexical pad. The anonymous ARRAY has a refcount() of 2, because both $var and $othervar store a reference to it. After the CODE reference is constructed, the $var variable now has an SvREFCNT() of 2, because it also appears in the lexical pad for the new anonymous CODE block. PURE-PERL FALLBACK An XS implementation of this function is provided, and is used by default. If the XS library cannot be loaded, a fallback implementation in pure perl using the "B" module is used instead. This will behave identically, but is much slower. Rate pp xs pp 225985/s -- -66% xs 669570/s 196% -- SEE ALSO
o Test::Refcount - assert reference counts on objects AUTHOR
Paul Evans <leonerd@leonerd.org.uk> perl v5.14.2 2011-11-15 Devel::Refcount(3pm)
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