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Top Forums Shell Programming and Scripting Script to process a list of items and uncomment lines with that item in a second file Post 303042972 by RudiC on Tuesday 14th of January 2020 02:51:49 PM
Old 01-14-2020
Quote:
Originally Posted by LMHmedchem
I went with this method inserted into a script. It worked well (and very quickly) the first time I tried it, but there was no output the second time.
Difficult to believe with unmodified input files. Pls report back your findings.

Quote:
It seems to me that sed must be doing more or less the same thing under the hood. Every list item must be checked against every item in the file to be modified, at least until a match is found.
A regex using "alternation" as brought into play in rbatte1's post #4 will be the most efficient approach, as it will scan each input line once with all alternations "in parallel".The "command substitution" to produce the alternation (pasteing from file2) will be done once, and upfront.

Quote:
I wasn't able to rationalize if it was more efficient to have one or the other file be the inner loop.
Don't use file operations in the inner loop if at all avoidable. They're costly and have to be repeated for every single line read / operated upon in the outer loop.

Quote:
If the list was the inner loop, you could delete each array element when a match was found and thus shorten the search as the process continues but deleting and shifting around array elements also takes resources.
Yes if you
- are sure no more occurrences of the element will come
- have access to the algorithm. True for your own shell script (slooow by itself), false for binary commands like sed.

Quote:
Does anyone know what sed is doing to achieve the result so quickly? Is it mainly that is is using compiled code?

LMHmedchem
I guess it's optimized for (complex!) regex matching. And yes, compiled code.
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math::fuzzy(3tcl)						 Tcl Math Library						 math::fuzzy(3tcl)

__________________________________________________________________________________________________________________________________________________

NAME
math::fuzzy - Fuzzy comparison of floating-point numbers SYNOPSIS
package require Tcl ?8.3? package require math::fuzzy ?0.2? ::math::fuzzy::teq value1 value2 ::math::fuzzy::tne value1 value2 ::math::fuzzy::tge value1 value2 ::math::fuzzy::tle value1 value2 ::math::fuzzy::tlt value1 value2 ::math::fuzzy::tgt value1 value2 ::math::fuzzy::tfloor value ::math::fuzzy::tceil value ::math::fuzzy::tround value ::math::fuzzy::troundn value ndigits _________________________________________________________________ DESCRIPTION
The package Fuzzy is meant to solve common problems with floating-point numbers in a systematic way: o Comparing two numbers that are "supposed" to be identical, like 1.0 and 2.1/(1.2+0.9) is not guaranteed to give the intuitive result. o Rounding a number that is halfway two integer numbers can cause strange errors, like int(100.0*2.8) != 28 but 27 The Fuzzy package is meant to help sorting out this type of problems by defining "fuzzy" comparison procedures for floating-point numbers. It does so by allowing for a small margin that is determined automatically - the margin is three times the "epsilon" value, that is three times the smallest number eps such that 1.0 and 1.0+$eps canbe distinguished. In Tcl, which uses double precision floating-point numbers, this is typically 1.1e-16. PROCEDURES
Effectively the package provides the following procedures: ::math::fuzzy::teq value1 value2 Compares two floating-point numbers and returns 1 if their values fall within a small range. Otherwise it returns 0. ::math::fuzzy::tne value1 value2 Returns the negation, that is, if the difference is larger than the margin, it returns 1. ::math::fuzzy::tge value1 value2 Compares two floating-point numbers and returns 1 if their values either fall within a small range or if the first number is larger than the second. Otherwise it returns 0. ::math::fuzzy::tle value1 value2 Returns 1 if the two numbers are equal according to [teq] or if the first is smaller than the second. ::math::fuzzy::tlt value1 value2 Returns the opposite of [tge]. ::math::fuzzy::tgt value1 value2 Returns the opposite of [tle]. ::math::fuzzy::tfloor value Returns the integer number that is lower or equal to the given floating-point number, within a well-defined tolerance. ::math::fuzzy::tceil value Returns the integer number that is greater or equal to the given floating-point number, within a well-defined tolerance. ::math::fuzzy::tround value Rounds the floating-point number off. ::math::fuzzy::troundn value ndigits Rounds the floating-point number off to the specified number of decimals (Pro memorie). Usage: if { [teq $x $y] } { puts "x == y" } if { [tne $x $y] } { puts "x != y" } if { [tge $x $y] } { puts "x >= y" } if { [tgt $x $y] } { puts "x > y" } if { [tlt $x $y] } { puts "x < y" } if { [tle $x $y] } { puts "x <= y" } set fx [tfloor $x] set fc [tceil $x] set rounded [tround $x] set roundn [troundn $x $nodigits] TEST CASES
The problems that can occur with floating-point numbers are illustrated by the test cases in the file "fuzzy.test": o Several test case use the ordinary comparisons, and they fail invariably to produce understandable results o One test case uses [expr] without braces ({ and }). It too fails. The conclusion from this is that any expression should be surrounded by braces, because otherwise very awkward things can happen if you need accuracy. Furthermore, accuracy and understandable results are enhanced by using these "tolerant" or fuzzy comparisons. Note that besides the Tcl-only package, there is also a C-based version. REFERENCES
Original implementation in Fortran by dr. H.D. Knoble (Penn State University). P. E. Hagerty, "More on Fuzzy Floor and Ceiling," APL QUOTE QUAD 8(4):20-24, June 1978. Note that TFLOOR=FL5 took five years of refereed evolution (publication). L. M. Breed, "Definitions for Fuzzy Floor and Ceiling", APL QUOTE QUAD 8(3):16-23, March 1978. D. Knuth, Art of Computer Programming, Vol. 1, Problem 1.2.4-5. BUGS, IDEAS, FEEDBACK This document, and the package it describes, will undoubtedly contain bugs and other problems. Please report such in the category math :: fuzzy of the Tcllib SF Trackers [http://sourceforge.net/tracker/?group_id=12883]. Please also report any ideas for enhancements you may have for either package and/or documentation. KEYWORDS
floating-point, math, rounding CATEGORY
Mathematics math 0.2 math::fuzzy(3tcl)
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