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Top Forums Shell Programming and Scripting Script to process a list of items and uncomment lines with that item in a second file Post 303042968 by LMHmedchem on Tuesday 14th of January 2020 12:15:18 PM
Old 01-14-2020
Quote:
Originally Posted by RudiC
Nice approach indeed!
Could be curtailed to
Code:
sed -r "/'($(paste -sd\| file2))'/s/^C//" file1

, including the item list file as well.
I went with this method inserted into a script. It worked well (and very quickly) the first time I tried it, but there was no output the second time. I will have to investigate what I did there.

I also made a second try before there were any responses here. This ended up looking more like the code posted by MadeInGermany where I read in the file to be modified and stored it in an array. I then did a double loop with the outside loop being my list file and the inside loop being the array with the file to be modified. Each item in the list was searched against the lines in the array. If a match was found, the array element was modified to remove the comment and then there was a break in the inner loop. The modified array was printed at the end. This approach means that each file is read in once and the output was written once, instead of once for each list item.

It seems to me that sed must be doing more or less the same thing under the hood. Every list item must be checked against every item in the file to be modified, at least until a match is found. I wasn't able to rationalize if it was more efficient to have one or the other file be the inner loop. The only approach I could think of that would be faster would be to identify the 'Gmax" value on each line of the file to be modified and then loop up that value in a map holding the list. That would, however, involve much more significant parsing of the lines to extract the 'Gmax' value. It is very nice to have a glob match, especially when there isn't a clear and consistent delimiter. If the list was the inner loop, you could delete each array element when a match was found and thus shorten the search as the process continues but deleting and shifting around array elements also takes resources.

Does anyone know what sed is doing to achieve the result so quickly? Is it mainly that is is using compiled code?

LMHmedchem
 

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DIFF(1) 						      General Commands Manual							   DIFF(1)

NAME
diff - differential file comparator SYNOPSIS
diff [ -efbh ] file1 file2 DESCRIPTION
Diff tells what lines must be changed in two files to bring them into agreement. If file1 (file2) is `-', the standard input is used. If file1 (file2) is a directory, then a file in that directory whose file-name is the same as the file-name of file2 (file1) is used. The normal output contains lines of these forms: n1 a n3,n4 n1,n2 d n3 n1,n2 c n3,n4 These lines resemble ed commands to convert file1 into file2. The numbers after the letters pertain to file2. In fact, by exchanging `a' for `d' and reading backward one may ascertain equally how to convert file2 into file1. As in ed, identical pairs where n1 = n2 or n3 = n4 are abbreviated as a single number. Following each of these lines come all the lines that are affected in the first file flagged by `<', then all the lines that are affected in the second file flagged by `>'. The -b option causes trailing blanks (spaces and tabs) to be ignored and other strings of blanks to compare equal. The -e option produces a script of a, c and d commands for the editor ed, which will recreate file2 from file1. The -f option produces a similar script, not useful with ed, in the opposite order. In connection with -e, the following shell program may help maintain multiple versions of a file. Only an ancestral file ($1) and a chain of version-to-version ed scripts ($2,$3,...) made by diff need be on hand. A `latest version' appears on the standard output. (shift; cat $*; echo '1,$p') | ed - $1 Except in rare circumstances, diff finds a smallest sufficient set of file differences. Option -h does a fast, half-hearted job. It works only when changed stretches are short and well separated, but does work on files of unlimited length. Options -e and -f are unavailable with -h. FILES
/tmp/d????? /usr/lib/diffh for -h SEE ALSO
cmp(1), comm(1), ed(1) DIAGNOSTICS
Exit status is 0 for no differences, 1 for some, 2 for trouble. BUGS
Editing scripts produced under the -e or -f option are naive about creating lines consisting of a single `.'. DIFF(1)
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