Hello,
I have installed my system AIX5.3 through NIM.
The manual doesn't work. Do you have any idea ?
Below my confid. There a specific fileset missing ?
Thanks in advance for your help
# man ls
Manual entry for ls not found or not installed.
# lslpp -l bos.rte.man
Fileset ... (0 Replies)
HI,
We configured the webserver under the opt/SUNWwbsvr/https-pw-frontend/ in unix box. We have server start and stop command under the opt/SUNWwbsvr/https-pw-frontend/
Unexpectedly our password webserver's(sun one webserver's) are down, when I tried to start the server this is the error I'm... (1 Reply)
Hi,
I am on the following version:
SunOS e105 5.8 Generic_117350-26 sun4u sparc SUNW,Sun-Fire-15000
I am running a makefile to build some Tuxedo servers. Following is a
snippet of my output:
BS-550.c:
/home/sybase/sybase12/OCS-12_EBF10731/include/sybesql.c:
ld: fatal: library... (0 Replies)
Hi Friends
I have a compiler(Sun Forte,I believe) running in my Solaris 9 box.
since y'day my development team is finding this error when they compile:
ld.so.1: expr: fatal: libgmp.so.3: open failed: No such file or directory
I ran a search for this file and found it in one of my file... (2 Replies)
Hi,
I am trying to install Grace version 5.1.22.
The configuration script gives the error below:
checking for a Motif >= 1002 compatible API... no
configure: error: M*tif has not been found
I had lesstif2 and lesstif2-dev installed when I first encountered the error. I installed... (0 Replies)
Hi,
I require need help in two aspects actually:
1) Fatal error that gets generated as %F% from a log file say ABClog.dat to trigger a mail. At present I manually grep the log file as <grep %F% ABClog.dat| cut-d "%" -f1>. The idea is to use this same logic to grep the log file which is... (1 Reply)
Trying to compile a C program recievin this
hello.c:1:19: fatal error: stdio.h: No such file or directory
gcc is installed on the system.
echo $PATH
/usr/bin:/usr/sbin:/usr/gcc/4.5/include/c++/4.5.2/tr1
root@Sol11swtb01:/media/NO NAME/Programming/C/Testing# cd... (2 Replies)
Hi All,
I am trying to include a mcrypt.h header but I am getting the below error:
test01> gcc test1.c
test1.c:5:20: fatal error: mcrypt.h: No such file or directory
#include <mcrypt.h>
^
compilation terminated.
As I cannot put my encryption program here, so have... (4 Replies)
Today, I noticed some errors in our SSL cert renewal log files, mostly related to domains where the IP address had changed. Concerned about this, rebuilt out SSL cert, which normally goes well without a hiccup.
However, for today, for some reason which I cannot explain, there was a PHP error... (0 Replies)
Hello Forum,
I'm issuing a one line bash command to look for the version of an installed application and saving the result to a variable like so:
APP=application --version
But if the application is not installed I want to return to my variable that the Application is not installed. So I'm... (2 Replies)
Discussion started by: greavette
2 Replies
LEARN ABOUT DEBIAN
bio::matrix::psm::psmheader
Bio::Matrix::PSM::PsmHeader(3pm) User Contributed Perl Documentation Bio::Matrix::PSM::PsmHeader(3pm)NAME
Bio::Matrix::PSM::PsmHeader - PSM mast parser implementation
SYNOPSIS
# See Bio::Matrix::PSM::IO for detailed documentation on how to use
# PSM parsers
DESCRIPTION
Parser for mast. This driver unlike meme or transfac for example is dedicated more to PSM sequence matches
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Stefan Kirov
Email skirov@utk.edu
APPENDIX
new
Title : new
Usage : my $header= Bio::Matrix::PSM::PsmHeader->new(-seq=>\%seq,
-mid=>\%mid,
-width=>\%width,
-instances=>\%instances,
-header=>@header,
-type=>'mast');
Function: Creates a new Bio::Matrix::PSM::PsmHeader object
Throws :
Example :
Returns : Bio::Matrix::PSM::PsmHeader object
Args : hash
seq
Title : seq
Usage : my %seq= $header->seq();
Function: Returns the sequence data as a hash, indexed by a sequence ID (motif id or accession number)
In case the input data is a motif it would return the consenus seq for each of them (mast).
Throws :
Example :
Returns : hash
Args :
hid
Title : hid
Usage : my @hid= $header->hid();
Function: Returns array with the motif ids
Throws :
Example :
Returns : array
Args :
length
Title : length
Usage : my %length= $header->length();
Function: Returns the length of the input sequence or motifs as a hash, indexed
by a sequence ID (motif id or accession number)
Throws :
Example :
Returns : hash
Args :
instances
Title : instances
Usage : my %instances= $header->instances();
Function: Returns the info about the input data, contained in the header
Throws :
Example :
Returns : hash
Args :
weight
Title : weight
Usage : my %weights= $header->weight();
Function: Returns the weights of the input sequence as a hash, indexed
by a sequence ID
Throws :
Example :
Returns : hash
Args :
unstuctured
Title : unstuctured
Usage : my @unstructured= $header->unstuctured();
Function: Returns the unstructured data in the header as an array, one line per
array element, all control symbols are removed with W
Throws :
Example :
Returns : array
Args :
version
Title : version
Usage : my $version= $header->version;
Function: Returns the version of the file being parsed if such exists
Throws :
Example :
Returns : string
Args :
release
Title : release
Usage : my $release= $header->release;
Function: Returns the release of the file being parsed if such exists
Throws :
Example :
Returns : string
Args :
_check
Title : _check
Usage : if ($self->_check('weights') { #do something} else {return 0;}
Function: Checks if the method called is aplicable to the file format
Throws :
Example :
Returns : boolean
Args : string
perl v5.14.2 2012-03-02 Bio::Matrix::PSM::PsmHeader(3pm)