Calculate e raise to the power in awk

Sponsored Content

Top Forums UNIX for Beginners Questions & Answers Calculate e raise to the power in awk | UNIX Post 303041158 by RudiC on Friday 15th of November 2019 04:46:20 PM

11-15-2019

Registered User

I get the same results as you do applying your script to your sample data. But, not knowing WHAT formula to apply under which conditions, I can't tell "what (you're) ... doing is right." And, I'm afraid, nobody without a profound background in genetics can.

Aside, your code might benefit (improved readability and understandability, ease of maintenance) from some structuring and, mayhap, simplification. Like e.g.

Code:

awk '
FNR == 1        {print $0,"weight"
                 next
                }

                {TMP =  exp (($2<=0.01) ? (1-$2)*25 : (0.5-$2)*0.5 )
                 print $0, TMP / (1 + TMP)
                }
'  file
SNP MAF weight
10:60523:T:G 0.013 0.560576
10:62010:C:T 0.01125 0.560792
10:69083:C:T 0.3581 0.51773
10:73537:G:A 0.005268 1

Last edited by RudiC; 11-15-2019 at 05:55 PM..

This User Gave Thanks to RudiC For This Post:

RudiC

View Public Profile for RudiC

Find all posts by RudiC

7 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

How to calculate with awk

Hi, I have below awk statement and I need to convert the second field ( substr($0,8,6))from minutes to hours with 2 decimail place. How can I achieve this? /usr/bin/awk '{print substr($0,23,4),substr($0,8,6)}' /tmp/MANAGER_LIST.$$ >> /tmp/NEWMANAGER_LIST.$$ Thanks for any help!

2. Shell Programming and Scripting

how can i calculate a file using awk

hi all Am new to scripting... So,i have a file named file1 its contents are as follows: joy 55 66 77 ruby 77 88 99 saloni 88 44 33 I would require a script which will calculate its percentage,its total and the average with awk script Many thanks in advance.. Please reply me at...

3. Shell Programming and Scripting

raise an alarm in Unix

Hi members, I am working in WebSphere in Unix environment. we are working with 500 odd servers and most of the times processes got down. Can i have any shell script through whih some popup with alarm get raised whenever some server get down. kindly help.. Thanks Rishi

4. Shell Programming and Scripting

Calculate P Value -Awk

Is there any awk command to calculate P Value ?(Probability) Is it possib;e to calculate P va;ue for this data for ex? 7.891284 8.148193 7.749575 7.958188 7.887702 7.714877 8.141548 7.51845 8.27736 7.929853 7.92456 8.249126 7.989113 8.012573 8.351206

5. Shell Programming and Scripting

Calculate Average AWK

I want to calculate the average line by line of some files with several lines on them, the files are identical, just want to average the 3rd columns of those files.:wall: Example file: File 1 001 0.046 0.667267 001 0.047 0.672028 001 0.048 0.656025 001 0.049 ...

6. UNIX for Advanced & Expert Users

Unix user with root power problem in to login in putty

Hello, I created a user in my AIX 5.3 system and i modified /etc/passwd file in and assigned this user the uid=0 like root user. The problem is that when this user log into the system through putty it asks for root password instead of the user password. As a result of this, if i reset the...

7. UNIX for Dummies Questions & Answers

[Solved] To the power of using awk

Hi Guys, I got stuck to a a point where I need to find the value for (4 to the power of -2 upto 8 places after decimal .... 4^(-2) ; the result I need is upto 8 places after decimal. How is that possible? Thanks a lot!!

LEARN ABOUT DEBIAN

weight

WEIGHT(1)						      General Commands Manual							 WEIGHT(1)

NAME

       weight - calculates sequence weights for an alignment

SYNOPSIS

       weight [-options] <alignment file>

DESCRIPTION

       This manual page documents briefly the weight command.

       weight is a program that calculates weights for a sequence alignment.

OPTIONS

       Available options:

       -b <f> Use BLOSUM weighting scheme at <f> fractional identity.

       -f <f> Filter out seqs w/ fractional ident > <x> [0-1].

       -h     Help; print version and usage info.

       -o <file>
	      Save weight-annotated alignment in <outfile>.

       -p     Use position based weight scheme (Henikoff & Henikoff).

       -s <n> Sample <n> sequences at random into a new alignment.

       -v     Use Voronoi weight scheme (Sibbald & Argos).

       --informat <s>
	      Specify alignment file format <s>.
	      Allowed formats: SELEX, MSF, Clustal, a2m, PHYLIP.

       --quiet
	      Suppress verbose banner.

SEE ALSO

       afetch(1),  alistat(1),	compalign(1),  compstruct(1), revcomp(1), seqsplit(1), seqstat(1), sfetch(1), shuffle(1), sindex(1), sreformat(1),
       stranslate(1),

AUTHOR

       Sean Eddy
       HHMI/Department of Genetics
       Washington University School of Medicine
       4444 Forest Park Blvd., Box 8510
       St Louis, MO 63108 USA
       Phone: 1-314-362-7666
       FAX  : 1-314-362-2157
       Email: eddy@genetics.wustl.edu

       This manual page was written by Nelson A. de Oliveira <naoliv@gmail.com>,
       for the Debian project (but may be used by others).

							  Mon, 01 Aug 2005 15:28:08 -0300						 WEIGHT(1)