Hi,
I have below awk statement and I need to convert the second field ( substr($0,8,6))from minutes to hours with 2 decimail place. How can I achieve this?
/usr/bin/awk '{print substr($0,23,4),substr($0,8,6)}' /tmp/MANAGER_LIST.$$ >> /tmp/NEWMANAGER_LIST.$$
Thanks for any help! (4 Replies)
hi all
Am new to scripting...
So,i have a file named file1 its contents are as follows:
joy 55 66 77
ruby 77 88 99
saloni 88 44 33
I would require a script which will calculate its percentage,its total and the average with awk script
Many thanks in advance..
Please reply me at... (4 Replies)
Hi members, I am working in WebSphere in Unix environment. we are working with 500 odd servers and most of the times processes got down. Can i have any shell script through whih some popup with alarm get raised whenever some server get down. kindly help.. Thanks Rishi (1 Reply)
Is there any awk command to calculate P Value ?(Probability)
Is it possib;e to calculate P va;ue for this data for ex?
7.891284
8.148193
7.749575
7.958188
7.887702
7.714877
8.141548
7.51845
8.27736
7.929853
7.92456
8.249126
7.989113
8.012573
8.351206 (2 Replies)
I want to calculate the average line by line of some files with several lines on them, the files are identical, just want to average the 3rd columns of those files.:wall:
Example file:
File 1
001 0.046 0.667267
001 0.047 0.672028
001 0.048 0.656025
001 0.049 ... (2 Replies)
Hello,
I created a user in my AIX 5.3 system and i modified /etc/passwd file in and assigned this user the uid=0 like root user.
The problem is that when this user log into the system through putty it asks for root password instead of the user password.
As a result of this, if i reset the... (4 Replies)
Hi Guys,
I got stuck to a a point where I need to find the value for (4 to the power of -2 upto 8 places after decimal ....
4^(-2) ; the result I need is upto 8 places after decimal.
How is that possible?
Thanks a lot!! (2 Replies)
Discussion started by: Indra2011
2 Replies
LEARN ABOUT DEBIAN
bio::alignio::maf
Bio::AlignIO::maf(3pm) User Contributed Perl Documentation Bio::AlignIO::maf(3pm)NAME
Bio::AlignIO::maf - Multiple Alignment Format sequence input stream
SYNOPSIS
Do not use this module directly. Use it via the Bio::AlignIO class.
use Bio::AlignIO;
my $alignio = Bio::AlignIO->new(-fh => *STDIN, -format => 'maf');
while(my $aln = $alignio->next_aln()){
my $match_line = $aln->match_line;
print $aln, "
";
print $aln->length, "
";
print $aln->num_residues, "
";
print $aln->is_flush, "
";
print $aln->num_sequences, "
";
$aln->splice_by_seq_pos(1);
print $aln->consensus_string(60), "
";
print $aln->get_seq_by_pos(1)->seq, "
";
print $aln->match_line(), "
";
print "
";
}
DESCRIPTION
This class constructs Bio::SimpleAlign objects from an MAF-format multiple alignment file.
Writing in MAF format is currently unimplemented.
Spec of MAF format is here:
http://genome.ucsc.edu/FAQ/FAQformat
FEEDBACK
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHORS - Allen Day
Email: allenday@ucla.edu
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
new
Title : new
Usage : my $alignio = Bio::AlignIO->new(-format => 'maf'
-file => '>file',
-idlength => 10,
-idlinebreak => 1);
Function: Initialize a new L<Bio::AlignIO::maf> reader
Returns : L<Bio::AlignIO> object
Args :
next_aln
Title : next_aln
Usage : $aln = $stream->next_aln()
Function: returns the next alignment in the stream.
Throws an exception if trying to read in PHYLIP
sequential format.
Returns : L<Bio::SimpleAlign> object
Args :
perl v5.14.2 2012-03-02 Bio::AlignIO::maf(3pm)