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Full Discussion: Rename files with its pathname
Top Forums UNIX for Beginners Questions & Answers Rename files with its pathname Post 303040301 by Jag02 on Saturday 26th of October 2019 07:18:39 AM
Old 10-26-2019
Rename files with its pathname
Hi,


I have a few csv files within the directory structure as shown below

Code:
/tmp/user/Proj/V1/data/Common1/Zip1/123.csv
/tmp/user/Proj/V1/data/Common2/Zip2/3453.csv
/tmp/user/Proj/V1/data/Common2/Zip2/1234.csv
and so on...

I need to get these csv files and move to another dir with the filename Common1_Zip1_123.csv,Common2_Zip2_3453.csv etc..I have written the following code but the filenames are having the whole path..Pl. correct on my code..


Code:
#!/bin/bash

SourceDir="/tmp/user/Proj/V1/data/
DestDir="/tmp/user/Proj/V1/data/FinalData"

for file in $(find $SourceDir -type f -name *.csv); do
        shortname=${file##*/$SourceDir/}
        newname="$DestDir/${shortname//\//_}"
        if [ -f $newname ]; then
                echo "$newname already exists."
        else
                cp $file $newname
        fi
done


The output i am getting is:
Code:
_tmp_user_Proj_V1_data_COMMON1_ZIP1_123.csv

 

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LEARN ABOUT DEBIAN

csv2mipe

CSV2MIPE(1)						User Contributed Perl Documentation					       CSV2MIPE(1)

NAME

       csv2mipe.pl - Generates MIPE file based on 3 tab-delimited files
	 based on MIPE version v1.1
	 arguments: * tab-delimited file with PCR-level data
		    * tab-delimited file with SNP-level data
		    * tab-delimited file with assay-level data

	 Columns in file with PCR-level data:
	   pcr_id
	   pcr_modified (might be multiple, divided by semi-colon ";")
	   pcr_project (might be multiple, divided by semi-colon ";")
	   pcr_researcher (might be multiple, divided by semi-colon ";")
	   pcr_species
	   source_type
	   source_id
	   design_seq
	   primer1_oligo
	   primer1_seq
	   primer1_tm
	   primer2_oligo
	   primer2_seq
	   primer2_tm
	   design_remark (might be multiple, divided by semi-colon ";")
	   use_seq
	   use_revcomp
	   use_remark (might be multiple, divided by semi-colon ";")
	   pcr_remark (might be multiple, divided by semi-colon ";")

	 Columns in file with SNP-level data:
	   pcr_id
	   snp_id
	   snp_pos
	   snp_amb
	   snp_remark (might be multiple, divided by semi-colon ";")

	 Columns in file with assay-level data:
	   pcr_id
	   snp_id
	   assay_id
	   assay_type
	   assay_enzyme
	   assay_oligo
	   assay_specific
	   assay_tail
	   assay_strand
	   assay_remark (might be multiple, divided by semi-colon ";")

SYNOPSIS

       csv2mipe.pl <pcr_file.csv> <snp_file.csv> <assay_file.csv>

ADDITIONAL INFO

       See http://mipe.sourceforge.net

AUTHOR

       Jan Aerts (jan.aerts@bbsrc.ac.uk)

perl v5.14.2							    2005-07-20							       CSV2MIPE(1)
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