I put an echo "These are the files:" $file statement and the files in data before the script executes are:
Code:
These are the files: IonCode_0402_xxx.xxx_xxx.bam
These are the files: IonCode_0402_xxx.xxx_xxx.bam.bai
These are the files: IonCode_0404_xxx.xxx_xxx.bam
These are the files: IonCode_0404_xxx.xxx_xxx.bam.bai
Hi,
I am having file which contains around 15 columns, i need to fetch column 3,12,14 based on the condition that column 3 starts with 40464
this is the sample data
how to achieve that (3 Replies)
I’m trying to modify someone perl script to fix a bug. The piece of code checks that the zone name you want to add is unique. However, when the code runs, it finds a partial match using grep, and decides it already exists, so the “create” command exits.
$cstatus = `${ZADM} list -vic | grep... (3 Replies)
Hi, I was trying to figure this out but failed so I hope someone here can help me, thank you in advance.
I have two files.
file1: aa M
bb N
cc O
dd P
ee Q file2: aa A_87_P254063
cc A_87_P016532
bb A_87_P104793
dd A_87_P055331
ee A_87_P059706
aa A_87_P071636
ee A_87_P028302... (2 Replies)
Hi I have a question and hope I can get answer here. Thank you in advance.
I have two files:
file1:
aa X
bb Y
cc Z
file2:
cc A
bb B
dd C
aa D
bb E
If the 1st column match in both file1 and file2, the 2nd column in file2 will be replaced by the 2nd column in file1. If there is no... (2 Replies)
I posted the incorrect files yesterday and apologize. I also modified the awk script but with no luck. There are two text files in the zip (name.txt and output.txt). I am trying to match $2 in name.txt with $1 in output.txt and if they match then $1 of name.txt is copied to $7 of output.txt. ... (7 Replies)
I have a specific set (all ending with .bam) of downloaded files in a directory /home/cmccabe/Desktop/NGS/API/2-15-2016. What I am trying to do is use a match to $2 in name to rename the downloaded files. To make things a more involved the date of the folder is unique and in the header of name... (1 Reply)
Hi All,
I have 100 folders with the first delimiter has a unique name i.e (123_hello and 575_hello) and each folder have atlist 1000 plus files with naming convention i.e (575_hello_1.iso ... 575_hello_1000.iso).
575_hello/575_hello_1.iso
575_hello/575_hello_2.iso
575_hello/575_hello_3.iso... (8 Replies)
Hi, I have a tab delimited text file like this one. I need to do a partial match of a particular cell and then replace matches with an empty cell. So here is a sample:
Smith FordMustang ChevroletCamaro
Miller FordFiesta
Jones KiaSorrento
Davis ChevroletCamaro
Johnson ToyotaHighlander
I... (4 Replies)
I am trying to create a cronjob that will run on startup that will look at a list.txt file to see if there is a later version of a database using database.txt as the source. The matching lines are written to output.
$1 in database.txt will be in list.txt as a partial match. $2 of database.txt... (2 Replies)
In the portion of bash below I am using rename to match the $id variable to $file and when a match (there will alwsys be one) is found then the $id is removed from each bam and bam.bai in $file and _test is added to thee file name before the extension. Each of the variables is set correctly but... (3 Replies)
Discussion started by: cmccabe
3 Replies
LEARN ABOUT DEBIAN
explain_rename_or_die
explain_rename_or_die(3) Library Functions Manual explain_rename_or_die(3)NAME
explain_rename_or_die - change the name of a file and report errors
SYNOPSIS
#include <libexplain/rename.h>
void explain_rename_or_die(const char *oldpath, const char *newpath);
DESCRIPTION
The explain_rename_or_die function is used to call the rename(2) system call. On failure an explanation will be printed to stderr,
obtained from explain_rename(3), and then the process terminates by calling exit(EXIT_FAILURE).
This function is intended to be used in a fashion similar to the following example:
explain_rename_or_die(oldpath, newpath);
oldpath The oldpath, exactly as to be passed to the rename(2) system call.
newpath The newpath, exactly as to be passed to the rename(2) system call.
Returns:
This function only returns on success. On failure, prints an explanation and exits.
SEE ALSO rename(2)
change the name or location of a file
explain_rename(3)
explain rename(2) errors
exit(2) terminate the calling process
COPYRIGHT
libexplain version 0.52
Copyright (C) 2008 Peter Miller
explain_rename_or_die(3)
10-25-2019
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