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Top Forums Shell Programming and Scripting Rename file using partial match to another Post 303040192 by cmccabe on Thursday 24th of October 2019 05:01:51 PM
Old 10-24-2019
I'm not sure I understand completly but in f1 the same IonCode may appear multiple times. However, the value in uniq is always unique and the each IonCode above each uniq unill the newline in f1 will be found in the data as a pair. That is in f1 IonCode_0404 but in data IonCode_0404.bam and IonCode_0404.bam.bai. In f1 IonCode_0402 but in data IonCode_0402.bam and IonCode_0402.bam.bai.
Both IonCode pairs are renamed with the $2 values from each matching IonCode above uniq with _test after it. Thank you very much Smilie.

Last edited by cmccabe; 10-24-2019 at 06:12 PM..
 

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uniq(1) 						      General Commands Manual							   uniq(1)

Name
       uniq - report repeated lines in a file

Syntax
       uniq [-udc[+n][-n]] [input[output]]

Description
       The  command  reads  the  input	file comparing adjacent lines.	In the normal case, the second and succeeding copies of repeated lines are
       removed; the remainder is written on the output file.  Note that repeated lines must be adjacent in order to be found.  For further  infor-
       mation, see

Options
       The n arguments specify skipping an initial portion of each line in the comparison:

       -n Skips specified number of fields.  A field is defined as a string of non-space, non-tab characters separated by tabs and spaces from its
	  neighbors.

       +n Skips specified number of characters in addition to fields.  Fields are skipped before characters.

       -c Displays number of repetitions, if any, for each line.

       -d Displays only lines that were repeated.

       -u Displays only unique (nonrepeated) lines.

       If the -u flag is used, just the lines that are not repeated in the original file are output.  The -d option specifies  that  one  copy	of
       just the repeated lines is to be written.  The normal mode output is the union of the -u and -d mode outputs.

       The  -c option supersedes -u and -d and generates an output report in default style but with each line preceded by a count of the number of
       times it occurred.

See Also
       comm(1), sort(1)

																	   uniq(1)
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