Hi
I am looping through the contents of a file as follows
cat file |while read inrec
do
echo $inrec >> $TMP
done
(obviously this isn't all i am doing as it would be pointless but for the sake of the problem this is the important bit)
The file has fields which are separated by... (1 Reply)
HI,
Supose I have the folowing strings: "unix" and "linux". I want to concatenate the two strings, inserting between them a variable number of spaces.
ex1: unix linux
ex2: unix linux
Can you help me in this simple problem?
Regards,
Elio (2 Replies)
Greetings all,
I'm in need of some help in coming up with this command which requires me to append 5 strings together:
1. echo "Status from system:"
2. `cat logs.txt` (i need the output of this command)
3. echo "Error output: "
4. `cat errors.txt`(i need the output of this command)
5.... (3 Replies)
I would like to append the numbers 1, 2, 3, 4 and so on to the lines of the file:
Adam Wilkins | Colorado | 36
John Butler | Los Angeles | 47
Cassey Johnson | Minneapolis | 25
Albert Aniston | Miami | 19
....
Tony Legler | Sacramento | 55
Matt Simmons | New York | 38
Output would look... (4 Replies)
Hi
Following is an example line.
echo "192.22.22.22 \"33dffwef\" 200 300 dsdsd" | sed "s:\(\ *\ \):\1:"
I want it's output to be
200
However this is not the case. Can you tell me how to do it? I don't want to use AWK for this. Secondly, how can i fetch just 300? Should I use "\2"... (3 Replies)
I have a 13 number string, some whitespace, and then /mp3.
I need to join them. Everyline that I need this for begins with "cd" (without the quotes).
What it looks like now:
cd media/Audio/WAVE/9781933976334 /mp3 What I want my output to be:
cd media/Audio/WAVE/9781933976334/mp3 The 13... (7 Replies)
The question is not as simple as the title... I have a file, it looks like this
<string name="string1">RZ-LED</string>
<string name="string2">2.0</string>
<string name="string2">Version 2.0</string>
<string name="string3">BP</string>
I would like to check for duplicate entries of... (11 Replies)
hi gurus,
I'm executing some commands and I want to append both the command and output to a text file. Example:
echo "strings -a wicmex.o|grep '$Header'" >> tmp.txt
strings -a wicmex.o|grep '$Header' >> tmp.txt
echo "strings -a libwip.a|grep '$Header'" >> tmp.txt
strings -a libwip.a|grep... (1 Reply)
Hi ,
I am writing a shell script to check pvsizes in linux box.
# for i in `cat vgs1`
> do
> echo "########### $i ###########"
> pvs|grep -i $i|awk '{print $2,$1,$5}'>pvs_$i
> pvs|grep -i $i|awk '{print $1}'|while read a
> do
> fdisk -l $a|head -2|tail -1|awk '{print $2,$3}'>pvs_$i1
>... (3 Replies)
Hello Everyone ,
Iam a newbie to shell programming and iam reaching out if anyone can help in this :-
I have two files
1) Insert.txt
2) partition_list.txt
insert.txt looks like this :-
insert into emp1 partition (partition_name)
(a1,
b2,
c4,
s6,
d8)
select
a1,
b2,
c4, (2 Replies)
Discussion started by: nubie2linux
2 Replies
LEARN ABOUT DEBIAN
ace::sequence::featurelist
Ace::Sequence::FeatureList(3pm) User Contributed Perl Documentation Ace::Sequence::FeatureList(3pm)NAME
Ace::Sequence::FeatureList - Lightweight Access to Features
SYNOPSIS
# get a megabase from the middle of chromosome I
$seq = Ace::Sequence->new(-name => 'CHROMOSOME_I,
-db => $db,
-offset => 3_000_000,
-length => 1_000_000);
# find out what's there
$list = $seq->feature_list;
# Scalar context: count all the features
$feature_count = $list->types;
# Array context: list all the feature types
@feature_types = $list->types;
# Scalar context, 1 argument. Count this type
$gene_cnt = $list->types('Predicted_gene');
print "There are $gene_cnt genes here.
";
# Array context, 1 argument. Get list of subtypes
@subtypes = $list->types('Predicted_gene');
# Two arguments. Count type & subtype
$genefinder_cnt = $list->types('Predicted_gene','genefinder');
DESCRIPTION
Ace::Sequence::FeatureList is a small class that provides statistical information about sequence features. From it you can obtain summary
counts of the features and their types within a selected region.
OBJECT CREATION
You will not ordinarily create an Ace::Sequence::FeatureList object directly. Instead, objects will be created by calling a Ace::Sequence
object's feature_list() method. If you wish to create an Ace::Sequence::FeatureList object directly, please consult the source code for
the new() method.
OBJECT METHODS
There are only two methods in Ace::Sequence::FeatureList.
type()
This method has five distinct behaviors, depending on its context and the number of parameters. Usage should be intuitive
Context Arguments Behavior
------------------------
scalar -none- total count of features in list
array -none- list feature types (e.g. "exon")
scalar type count features of this type
array type list subtypes of this type
-any- type,subtype count features of this type & subtype
For example, this code fragment will count the number of exons present on the list:
$exon_count = $list->type('exon');
This code fragment will count the number of exons found by "genefinder":
$predicted_exon_count = $list->type('exon','genefinder');
This code fragment will print out all subtypes of "exon" and their counts:
for my $subtype ($list->type('exon')) {
print $subtype," ",$list->type('exon',$subtype),"
";
}
asString()
print $list->asString;
This dumps the list out in tab-delimited format. The order of columns is type, subtype, count.
SEE ALSO
Ace, Ace::Object, Ace::Sequence, Ace::Sequence::Feature, GFF
AUTHOR
Lincoln Stein <lstein@w3.org> with extensive help from Jean Thierry-Mieg <mieg@kaa.crbm.cnrs-mop.fr>
Copyright (c) 1999, Lincoln D. Stein
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for
disclaimers of warranty.
perl v5.14.2 2000-06-11 Ace::Sequence::FeatureList(3pm)