Thank you. Also I have another question. Basically for the input file (calculate_contacts_HS_*.pdb.txt) I want that all lines that have ALA in first or second column sum the third column numerical values of those lines. In the input file given below it would have to be 3 lines that contain ALA in 2nd column (but it can also be in 1st) and 3rd column summed would be: 1.32859+6.90889+0.0962809=8.333761. The example of input file is this:
and the script is this:
but for this script I don't get any value. When I run the script through command the output I get is this:
Because in my script AAA is assigned to one of the 20 values (ALA, ASN, ARG, ASP, CYS, GLU, GLN, LEU, ILE, LYS, MET, etc.) therefore $AAA can be assigned to different values, but for this case let's assume that $AAA = ALA.
I was wondering if it was possible to tell awk to print the output of a command in the print.
.... | awk '{print $0}'
I would like it to print the date right before $0, so something like (this doesn't work though)
.... | awk '{print date $0}' (4 Replies)
Hi, I'm stuck in an awkward situation please help :)
I have two identical Seagate 80GB harddrives.
My objective is a bit strange.
1.I want to have a cloned disk as bootable backup
2.When booting using the master drive, I also want to mount the cloned backup disk so I can do incremental... (6 Replies)
I have a file, let's say 1.jpg, and I have a text file that contains a list of filenames I would like to duplicate 1.jpg as (i.e., 2.jpg, 3.jpg, 4.jpg, etc.). The filenames that I want to create are all on separate lines, one per line.
I'm sure there's a simple solution, but I'm not claiming to... (7 Replies)
Hi all,
Actually 2 files are there - file1, file2.
file1 contains --->
london
mosco
america
russia
mosco
file2 contains -->
europe
india
japan
mosco
england
london
Question is I want to print all the city names without duplication cities in those... (10 Replies)
i have many questions concerning the FD.
it was stated that "to redirect Error to output std, you have to write the following code"
# ls -alt FileNotThere File > logfile 2>&1
# cat logfile
ls: cannot access FileNotThere: No such file or directory
-rw-r--r-- 1 root root 0 2010-02-26... (9 Replies)
Hey,
I am making a Facebook like Page system as my first project, So far it's been bate in mind I did it from my 3DS at the same time as my PC gets replaced, So far it's turned out great. Now I am on to creation the blocking system I need to get the code to say If the user already likes the... (0 Replies)
Hi all,
I download and install lessfs for deduplication,
I copy files in /SharedFiles directory and lessfs work right and not store again copy files,
but, when i delete all files in /SharedFiles , not return free space to total space,
files not show in /SharedFiles , but not copy new files in... (3 Replies)
So while this seemed totally trivial it turned out to be much more difficult than I had thought.
I have a file with 3 rows, and I "just" want to add each field n number of times. E.g.
> cat file.txt
0.5
-0.1
0.6
for n=3 into:
cat newfile.txt
0.5 0.5 0.5
-0.1 -0.1 -0.1
0.6 0.6 0.6
I... (4 Replies)
Hello,
Giving those commands:
cat > myfile
1
2
3
^D
cat myfile | awk '{ s=s+$1 ; print s}'
The output is:
1
3
6
It seems like this command iterates each time on a different row so $1 is the first field of each row.. But what caused it to refer to each row ?.
What I mean... (3 Replies)
Discussion started by: uniran
3 Replies
LEARN ABOUT XFREE86
total
TOTAL(1) General Commands Manual TOTAL(1)NAME
total - sum up columns
SYNOPSIS
total [ -m ][ -sE | -p | -u | -l ][ -i{f|d}[N] ][ -o{f|d} ][ -tC ][ -N [ -r ]] [ file .. ]
DESCRIPTION
Total sums up columns of real numbers from one or more files and prints out the result on its standard output.
By default, total computes the straigt sum of each input column, but multiplication can be specified instead with the -p option. Likewise,
the -u option means find the upper limit (maximum), and -l means find the lower limit (minimum).
Sums of powers can be computed by giving an exponent with the -s option. (Note that there is no space between the -s and the exponent.)
This exponent can be any real number, positive or negative. The absolute value of the input is always taken before the power is computed
in order to avoid complex results. Thus, -s1 will produce a sum of absolute values. The default power (zero) is interpreted as a straight
sum without taking absolute values.
The -m option can be used to compute the mean rather than the total. For sums, the arithmetic mean is computed. For products, the geomet-
ric mean is computed. (A logarithmic sum of absolute values is used to avoid overflow, and zero values are silently ignored.)
If the input data is binary, the -id or -if option may be given for 64-bit double or 32-bit float values, respectively. Either option may
be followed immediately by an optional count, which defaults to 1, indicating the number of double or float binary values to read per
record on the input file. (There can be no space between the option and this count.) Similarly, the -od and -of options specify binary
double or float output, respectively. These options do not need a count, as this will be determined by the number of input channels.
A count can be given as the number of lines to read before computing a result. Normally, total reads each file to its end before producing
its result, but this behavior may be overridden by inserting blank lines in the input. For each blank input line, total produces a result
as if the end-of-file had been reached. If two blank lines immediately follow each other, total closes the file and proceeds to the next
one (after reporting the result). The -N option (where N is a decimal integer) tells total to produce a result and reset the calculation
after every N input lines. In addition, the -r option can be specified to override reinitialization and thus give a running total every N
lines (or every blank line). If the end of file is reached, the current total is printed and the calculation is reset before the next file
(with or without the -r option).
The -tC option can be used to specify the input and output tab character. The default tab character is TAB.
If no files are given, the standard input is read.
EXAMPLE
To compute the RMS value of colon-separated columns in a file:
total -t: -m -s2 input
To produce a running product of values from a file:
total -p -1 -r input
BUGS
If the input files have varying numbers of columns, mean values will certainly be off. Total will ignore missing column entries if the tab
separator is a non-white character, but cannot tell where a missing column should have been if the tab character is white.
AUTHOR
Greg Ward
SEE ALSO cnt(1), neaten(1), rcalc(1), rlam(1), tabfunc(1)RADIANCE 2/3/95 TOTAL(1)