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Full Discussion: Permission denied question
Top Forums Shell Programming and Scripting Permission denied question Post 303035730 by Aurimas on Saturday 1st of June 2019 06:39:32 AM
Old 06-01-2019
Permission denied question

Dear forum members,

Below is my code, but I am getting permission denied when I try to run the script. Can someone explain what I am missing. I am using Mojave and try to run script on terminal.

Code:
#!/bin/bash
read -p "amino acid: " AAA
if [ "$AAA" == "ALA" ] || [ "$AAA" == "VAL" ] || [ "$AAA" == "ARG" ] || [ "$AAA" == "ASN" ] || [ "$AAA" == "ASP" ] || 
   [ "$AAA" == "CYS" ] || [ "$AAA" == "GLY" ] || [ "$AAA" == "ILE" ] || [ "$AAA" == "LEU" ] || [ "$AAA" == "LYS" ] ||
   [ "$AAA" == "MET" ] || [ "$AAA" == "PHE" ] || [ "$AAA" == "PRO" ] || [ "$AAA" == "SER" ] || [ "$AAA" == "THR" ] || 
   [ "$AAA" == "TRP" ] || [ "$AAA" == "TYR" ] || [ "$AAA" == "HIS" ] || [ "$AAA" == "GLN" ] || [ "$AAA" == "GLU" ]
then 
	for i in HS_*.pdb.txt; do
			cat $i | grep -o -i $AAA | wc -l
    	done
elif [ "$AAA" == 0 ]
	then
		exit 1
else
	read -p "amino acid: " AAA
fi

Here's the error:

Quote:
-bash: ./AA_visu_skaiciavimas.sh: Permission denied
I will look forward to your responses.

Sincerely,
User
 

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SUBSTR_REPLACE(3)							 1							 SUBSTR_REPLACE(3)

substr_replace - Replace text within a portion of a string

SYNOPSIS
mixed substr_replace (mixed $string, mixed $replacement, mixed $start, [mixed $length]) DESCRIPTION
substr_replace(3) replaces a copy of $string delimited by the $start and (optionally) $length parameters with the string given in $replace- ment. PARAMETERS
o $string - The input string. An array of strings can be provided, in which case the replacements will occur on each string in turn. In this case, the $replacement, $start and $length parameters may be provided either as scalar values to be applied to each input string in turn, or as arrays, in which case the corresponding array element will be used for each input string. o $replacement - The replacement string. o $start - If $start is positive, the replacing will begin at the $start'th offset into $string. If $start is negative, the replacing will begin at the $start'th character from the end of $string. o $length - If given and is positive, it represents the length of the portion of $string which is to be replaced. If it is negative, it rep- resents the number of characters from the end of $string at which to stop replacing. If it is not given, then it will default to strlen( $string ); i.e. end the replacing at the end of $string. Of course, if $length is zero then this function will have the effect of inserting $replacement into $string at the given $start offset. RETURN VALUES
The result string is returned. If $string is an array then array is returned. EXAMPLES
Example #1 Simple substr_replace(3) examples <?php $var = 'ABCDEFGH:/MNRPQR/'; echo "Original: $var<hr /> "; /* These two examples replace all of $var with 'bob'. */ echo substr_replace($var, 'bob', 0) . "<br /> "; echo substr_replace($var, 'bob', 0, strlen($var)) . "<br /> "; /* Insert 'bob' right at the beginning of $var. */ echo substr_replace($var, 'bob', 0, 0) . "<br /> "; /* These next two replace 'MNRPQR' in $var with 'bob'. */ echo substr_replace($var, 'bob', 10, -1) . "<br /> "; echo substr_replace($var, 'bob', -7, -1) . "<br /> "; /* Delete 'MNRPQR' from $var. */ echo substr_replace($var, '', 10, -1) . "<br /> "; ?> Example #2 Using substr_replace(3) to replace multiple strings at once <?php $input = array('A: XXX', 'B: XXX', 'C: XXX'); // A simple case: replace XXX in each string with YYY. echo implode('; ', substr_replace($input, 'YYY', 3, 3))." "; // A more complicated case where each replacement is different. $replace = array('AAA', 'BBB', 'CCC'); echo implode('; ', substr_replace($input, $replace, 3, 3))." "; // Replace a different number of characters each time. $length = array(1, 2, 3); echo implode('; ', substr_replace($input, $replace, 3, $length))." "; ?> The above example will output: A: YYY; B: YYY; C: YYY A: AAA; B: BBB; C: CCC A: AAAXX; B: BBBX; C: CCC NOTES
Note This function is binary-safe. SEE ALSO
str_replace(3), substr(3), String access and modification by character. PHP Documentation Group SUBSTR_REPLACE(3)
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