I modified the find and added a loop to mkdir and got the expected results. Just wanted to share in case it helps anyone else in the future. Thank you .
Code:
DIR=/home/cmccabe/Desktop/sub ## define data directory path
for RDIR in "$DIR"/R_2019* ; do ## start processing matching "R_2019*" to operate on desired directory and expand
cd "$RDIR"/BAM ## change directory to subfolder inside $RDIR
i=$(find . -type f -name "*.bam" -print | while read f;do echo "$f" | cut -d_ -f2-;done| cut -f 1 -d '.') # extract .bam
for x in $i
do mkdir -p $RDIR/$x
done
done ## close loop
Hi, I need some help to see if I this is posible with a while loop. I need to run a script once a day that will take all of the *.TXT files in a folder and rename them to a specific file name structure with a .dat extension. I wrote this script, but I get an error that says " line 3: too many... (2 Replies)
Interpreter should be bash.
1. The problem statement, all variables and given/known data:
I need to make a file (myText.txt or song.mp3 or cloud.tar.gz or whatever) and then change the extension to (myText.TXT , song.MP3, cloud.TAR.GZ).
It would be good if I can add all information in... (4 Replies)
for x in `find /vmfs/volumes/v01tstn01a01/ -type d`; do find $x -name '*.vmx' > /dev/null || echo $x; done;
The goal of this is to find the subdirectories that do NOT contain a file with the extension of .vmx
Any help would be great! (6 Replies)
unix program to which a directory name will be passed as
parameter. This directory will contain files with various
extensions. This script will create directories with the names of the
extention of the files and then put the files in the
corresponding folder. All files which do not have any... (2 Replies)
hello,
i have the below while loop wherein i am passig list of filenames to be scped. this is in unix ksh -
filenamelist.txt has list of files names, including .dat and .txt files
but i want to pass only the .txt filenames to the while loop so that only .txt files gets scped.
how can... (4 Replies)
What's the command syntax for stripping out the tar.gz file extension in a bash command line (not script file). Thanks!
prompt/> ls *.tar.gz | <what comes here?> (3 Replies)
hi everyone,
I just began to be interested about the bash access.
I buy a time ago a Raspberry pi, I installed raspbmc and now I would like build a bash to copy everyday all new files inside my server directly on the hard drive in my Pi.
So my HDD is directly plug on my pi with usb connect,... (4 Replies)
I have a specific set (all ending with .bam) of downloaded files in a directory /home/cmccabe/Desktop/NGS/API/2-15-2016. What I am trying to do is use a match to $2 in name to rename the downloaded files. To make things a more involved the date of the folder is unique and in the header of name... (1 Reply)
I am trying to use bash to automate the scan of a specific directory using clamav. Having this in place is a network requirement. The below is an attempt to:
1. count the extensions (.txt, .jpeg) in a directory and write them to a virus-scan.log (section in bold)
2. scan each folder in the... (6 Replies)
The bash below executes and does find all the .bam files in each R_2019 folder. However set -x shows that the .bam extension only gets removed from one .bam file in each folder (appears to be the last in each). Why is it not removing the extension from each (this is $SAMPLE)? Thank you :).
set... (4 Replies)
Discussion started by: cmccabe
4 Replies
LEARN ABOUT XFREE86
suspicious-source
SUSPICIOUS-SOURCE(1) General Commands Manual SUSPICIOUS-SOURCE(1)NAME
suspicious-source - search for files that are not the GPL's "preferred form of modification"
SYNOPSIS
suspicious-source [options]
DESCRIPTION
suspicious-source is a script that outputs a list of files which are not common source files. This should be run in the root of a source
tree to find files which might not be the "preferred form of modification" that the GPL and other licenses require.
The files inside version control system directories (like .bzr/ or CVS/) are not considered.
OPTIONS -h, --help
Show this help message and exit.
-v, --verbose
Print more information.
-d directory, --directory=directory
Check the files in the specified directory instead of the current directory.
-m mimetype, --mimetype=mimetype
Add mimetype to list of white-listed MIME types.
-e extension, --extension=extension
Add extension to list of white-listed extensions.
AUTHORS
suspicious-source and this manpage have been written by Benjamin Drung <bdrung@debian.org>.
Both are released under the ISC license.
DEBIAN Debian Utilities SUSPICIOUS-SOURCE(1)
03-20-2019
.