11-10-2018
Quote:
Originally Posted by
cmccabe
The
$4 value in
file1 is not unique but is meant to ensure that, using line 1 as an example, only
SDBH lines are searched or used in the comparison. There may be hundreds of lines in
file1, but only a subset will match the
$4 value. Thank you
.
And, of that subset that match the
$4 value, we have to assume that the same subset or a smaller subset may be classified as "intron", the same subset or a smaller subset may be classified as "exon", and the same subset or a smaller subset may be classified as "splicing" when your criteria are applied. How are the subset of lines that match the
$4 value supposed to be combined or selected so that only one of the possible results are returned (presumably the one possible result that is the one that you want to match from all of the ones in the subset that do match)???
This User Gave Thanks to Don Cragun For This Post:
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depord(8) System Manager's Manual depord(8)
NAME
depord - Sort subset names into dependency order
SYNOPSIS
/usr/lbin/depord [-c ctrldir [-c ctrldir]...] [-f [namefile | -]] [-I | -i] [subsetID [subsetID...]]
OPTIONS
Searches the directory ctrldir for subset *.ctrl files instead of the current directory. You can use multiple -c options. Reads the subset
names from namefile. If you use the "-" argument instead of namefile, read the subset names from standard input. The namefile and "-" argu-
ments to the -f option are mutually exclusive. If you also specify subset names with subsetID operands, they are concatenated with the sub-
set names specified with the -f option. Includes in the ordered output the names of all prerequisite subsets for the subset name argument
list. The -I and -i options are mutually exclusive. Includes in the ordered output the names of all prerequisite subsets for the subset
name argument list, and excludes from the output any prerequisite subsets that are already installed. The -I and -i options are mutually
exclusive.
OPERANDS
The name of a subset for dependency checking and ordering. If you also specify subset names with the -f option, they are concatenated with
subsetID operands.
DESCRIPTION
The depord command reads the subset *.ctrl files in the specified directories for dependency information, then sorts the subset name argu-
ment list (and, optionally, prerequisite subset names) in dependency order. If other directories are not specified, depord searches for
subset *.ctrl files in the current directory. If you install the subsets in the order shown in the depord output, subset dependencies are
satisfied. If you are not using either the -I or -i option and if a subset dependency cannot be satisfied by the other specified subset
names, an error message displays and that subset is not included in the output. All subsets in a dependency cycle (where subsets are mutu-
ally dependent) are ignored. An error message displays, and those subsets are not included in the output.
The depord command is used by the setld(8) utility.
EXAMPLES
To sort the subsets listed on the command line into dependency order: # /usr/lbin/depord OSFCDEDT500 OSFX11500 OSFCDEMIN500 OSFX11500
OSFCDEMIN500 OSFCDEDT500
To use the -I option to list the prerequisite subsets for OSFDCEDT500, sorted into dependency order: # /usr/lbin/depord -I OSFCDEDT500 OSF-
BASE500 OSFX11500 OSFCLINET500 OSFNFS500 OSFCDEMIN500 OSFCDEDT500
To use the -i option to check the prerequisite subsets for OSFDCEDT500, and exclude from the output those that are already installed: #
/usr/lbin/depord -i OSFCDEDT500 OSFCDEDT500
RESTRICTIONS
The -I and -i options are mutually exclusive.
FILES
Executable file for depord command Indicates subsetID is already installed. Contents list other subsets dependent upon subsetID. Control
files with dependency information
SEE ALSO
setld(8) stl_ctrl(4) Programming Support Tools
depord(8)