11-10-2018
Quote:
Originally Posted by
cmccabe
The
$4 value in
file1 is not unique but is meant to ensure that, using line 1 as an example, only
SDBH lines are searched or used in the comparison. There may be hundreds of lines in
file1, but only a subset will match the
$4 value. Thank you
.
And, of that subset that match the
$4 value, we have to assume that the same subset or a smaller subset may be classified as "intron", the same subset or a smaller subset may be classified as "exon", and the same subset or a smaller subset may be classified as "splicing" when your criteria are applied. How are the subset of lines that match the
$4 value supposed to be combined or selected so that only one of the possible results are returned (presumably the one possible result that is the one that you want to match from all of the ones in the subset that do match)???
This User Gave Thanks to Don Cragun For This Post:
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I have a line like this:
I want to move HTTP/1.1 200 OK to the next line and put a blank line between the two lines i.e.
How can i get it using awk?
Thanks in advance (2 Replies)
Discussion started by: littleboyblu
2 Replies
2. Shell Programming and Scripting
Hi All,
I was wondering if anyone knew how to dynamically change the FS in awk to accept vairiable containing a field separator. the current code is as below and does not work when i introduce the dynamic FS change :-(
validate_source_file()
{
source_file=$1
... (2 Replies)
Discussion started by: satnamx
2 Replies
3. Shell Programming and Scripting
Hi Everyone,
# cat 1.txt
1321631,77770132976455,19,20091001011859,20091001011907
1321631,77770132976455,19,20091001011859,20091001011907
1321631,77770132976455,19,20091001011859,20091001011907
# cat 1.txt | awk -F, '{OFS=",";print $1,$3,$4,$5}'
1321631,19,20091001011859,20091001011907... (7 Replies)
Discussion started by: jimmy_y
7 Replies
4. Shell Programming and Scripting
Hi, all
I need to get fields in a line that are separated by commas, some of the fields are enclosed with double quotes, and they are supposed to be treated as a single field even if there are commas inside the quotes.
sample input:
for this line, 5 fields are supposed to be extracted, they... (8 Replies)
Discussion started by: kevintse
8 Replies
5. Shell Programming and Scripting
First, thanks for the help in previous posts... couldn't have gotten where I am now without it!
So here is what I have, I use AWK to match $1 and $2 as 1 string in file1 to $1 and $2 as 1 string in file2. Now I'm wondering if I can extend this AWK command to incorporate the following:
If $1... (4 Replies)
Discussion started by: right_coaster
4 Replies
6. Shell Programming and Scripting
Hi. I'd appreciate if I can get some direction in this issue to get me going.
Datafile1:
-About 4000 records, I have to update field#4 in selected records based on a match in the key field (Field#1).
-Field #1 is the key field (servername) . # of Fields may vary
# comment
server1 bbb ccc... (2 Replies)
Discussion started by: RascalHoudi
2 Replies
7. UNIX for Dummies Questions & Answers
Hi !
input:
111|222|333|aaa|bbb|ccc
999|888|777|nnn|kkk
444|666|555|eee|ttt|ooo|ppp
With awk, I am trying to change the FS "|" to "; " only from the 4th field until the end (the number of fields vary between records).
In order to get:
111|222|333|aaa; bbb; ccc
999|888|777|nnn; kkk... (1 Reply)
Discussion started by: beca123456
1 Replies
8. Shell Programming and Scripting
Hi Experts,
i need to change delimiter from tab to ","
sample test file
cat test
A0000368 A29938511 072569352 5 Any 2 for £1.00 BUTCHERS|CAT FOOD|400G Sep 12 2012 12:00AM Jan 5 2014 11:59PM Sep 7 2012 12:00AM M 2.000 group 5
... (2 Replies)
Discussion started by: Lakshman_Gupta
2 Replies
9. Shell Programming and Scripting
In the below awk in the first step I default Classification NF-1 to VUS. Next, I am trying to change the value of Classification (NF) to whatever CLINSIG (NF-1) is. If there is only one condition everything works great, but if there are two conditions it does not work. Is the syntax used... (4 Replies)
Discussion started by: cmccabe
4 Replies
10. Shell Programming and Scripting
In the awk below I am trying to copy the entire contents of $6 there may be multiple values seperated by a ;, to $8, if $8 is . (lines 1 and 3 are examples). If that condition $8 is not . (line2 is an example) then that line is skipped and printed as is. The awk does execute but prints the output... (3 Replies)
Discussion started by: cmccabe
3 Replies
kits(1) General Commands Manual kits(1)
NAME
kits - Generates setld format distribution kits
SYNOPSIS
/usr/bin/kits key-file input-path output-path [subset...]
OPERANDS
The pathname of the manufacturing key file which describes the product to be kitted. Unless optional subset arguments are specified, all
subsets listed in the descriptor section of the key-file are kitted. The pathname which specifies the top of a hierarchy of files. This
hierarchy contains the files which are to be kitted into subsets. The name of the directory to be used to store the subset image and data
files produced by the command. The names of individual subsets can be specified by optionally listing them on the command line. If they
are specified, only those subsets are kitted. The kits program assumes that all other subsets for the product have been kitted and that
their images are in the directory specified by output-path. The key file specified must contain descriptors for each of the optional named
subsets.
DESCRIPTION
The kits command produces subset images, inventories, and control files for an installation using the setld command. You need to know the
key file which describes the product to be built, a hierarchy from which the component files to be kitted are to be taken, and a destina-
tion directory into which the kit information is to be placed.
In the output-path directory, the kits command produces a subset image file for each subset and a product_code.image file listing all the
kit's subsets. In the instctrl subdirectory of output-path, kits produces an inventory file and a control file. The optional subset con-
trol program for any subset in the kit is transferred to output-path/instctrl. An instctrl directory is created if none existed.
RESTRICTIONS
Any subset control programs to be provided with the kit must be located in a directory named scps in the working directory where the kits
program is invoked. If no subset control program is found for a subset, an empty one is created.
ERRORS
The kits program was unable to find the key-file specified on the command line. The kits program was unable to find the specified input-
path. The kits program was unable to find the specified output-path. The kits program cannot create an instctrl directory under output-
path. Check that the user has write permission to output-path. One of the NAME, CODE, VERS, MI or ROOT values in the specified key-file is
either missing or has a null value. The master inventory file pathname specified in the MI entry of the key-file cannot be found. Verify
that the pathname is accessible from the current directory. There are no records in the master inventory file for a subset which is being
kitted. Check the master inventory file for correctness of content and format. A subset name specified on the command line does not have
a descriptor line in the key-file. Check the spelling of the subset name on the command line. Check the contents of the key-file. The
compression option was specified in the key-file and an attempt to compress a subset failed. This should not happen. Run the kits program
again.
EXAMPLES
Produce a kit using key file ULT400.k in the current directory to package files from the hierarchy /var/kits/input, and place the results
in /var/kits/output. kits OAT100.k /var/kits/input /var/kits/output
Produce a kit using key file ULT400.k in the current directory to package files from the hierarchy /var/kits/input, and place the results
in /var/kits/output, but create only the OATDCB100 subset. kits OAT100.k /var/kits/input /var/kits/output OATDCB100
FILES
Log of subset packaging activity
SEE ALSO
invcutter(1), newinv(1), tarsets(1), setld(8) stl_comp(4), stl_ctrl(4), stl_image(4), stl_key(4), stl_mi(4), stl_scp(4) Guide to Preparing
Product Kits
kits(1)