08-13-2018
Congrats Don from my side as well. I always envy you for your sharp analyses and brilliantly formulated contributions. Hope to continue to benefit from your expertise in the future...
These 2 Users Gave Thanks to RudiC For This Post:
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LEARN ABOUT DEBIAN
bio::factory::analysisi
Bio::Factory::AnalysisI(3pm) User Contributed Perl Documentation Bio::Factory::AnalysisI(3pm)
NAME
Bio::Factory::AnalysisI - An interface to analysis tool factory
SYNOPSIS
This is an interface module - you do not instantiate it. Use Bio::Tools::Run::AnalysisFactory module:
use Bio::Tools::Run::AnalysisFactory;
my $list = Bio::Tools::Run::AnalysisFactory->new->available_analyses;
DESCRIPTION
This interface contains all public methods for showing available analyses and for creating objects representing them.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR
Martin Senger (martin.senger@gmail.com)
COPYRIGHT
Copyright (c) 2003, Martin Senger and EMBL-EBI. All Rights Reserved.
This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
DISCLAIMER
This software is provided "as is" without warranty of any kind.
SEE ALSO
o http://www.ebi.ac.uk/Tools/webservices/soaplab/guide
APPENDIX
This is actually the main documentation...
If you try to call any of these methods directly on this "Bio::Factory::AnalysisI" object you will get a not implemented error message. You
need to call them on a "Bio::Tools::Run::AnalysisFactory" object instead.
available_categories
Usage : $factory->available_categories;
Returns : an array reference with the names of
available categories
Args : none
The analysis tools may be grouped into categories by their functional similarity, or by the similar data types they deal with. This method
shows all available such categories.
available_analyses
Usage : $factory->available_analyses;
$factory->available_analyses ($category);
Returns : an array reference with the names of
all available analyses, or the analyses
available in the given '$category'
Args : none || category_name
Show available analyses. Their names usually consist of category analysis names, separated by "::".
create_analysis
Usage : $factory->create_analysis ($name);
Returns : a Bio::Tools::Run::Analyis object
Args : analysis name
A real factory method creating an analysis object. The created object gets all access and location information from the factory object.
perl v5.14.2 2012-03-02 Bio::Factory::AnalysisI(3pm)