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Full Discussion: Syntax error C shell
Top Forums UNIX for Beginners Questions & Answers Syntax error C shell Post 303020339 by dulceC on Tuesday 17th of July 2018 04:29:04 AM
Old 07-17-2018
Syntax error C shell

Hello,


I have a newbe syntax error but I cant find it


Code:
syntax error: unexpected end of file


Code:
#!/bin/csh

# pe request
#$ -pe mpi_16 32 
#### 16 core : 'mpi_16 16' || 24 core : 'mpi_24 24 '

# our Job name 
#$ -N test2MD

#$ -S /bin/sh

#$ -q dulce.q


#### 16 core : '2687wv2.q'  || 24 core : '2697v2.q'

#$ -V

#$ -cwd

# needs in 
#   $NSLOTS          
#      the number of tasks to be used
#   $TMPDIR/machines 
#       a valid machiche file to be passed to mpirun 
#   enables $TMPDIR/rsh to catch rsh calls if available

echo "Got $NSLOTS slots."
cat $TMPDIR/machines

################ mpi execute #############################
MPI_HOME=/opt/intel/impi/4.0.0.028
MPI_EXEC=$MPI_HOME/bin64/mpirun
 cd $SGE_O_WORKDIR

rm ./POTCAR
cat /share/VASP_POTCAR/PAW_PBE_VASP52/C/POTCAR >./POTCAR
cat /share/VASP_POTCAR/PAW_PBE_VASP52/Li/POTCAR >>./POTCAR

runVASP=/opt/vasp/vasp.5.4/vasp.5.4.1/bin/vasp_std
runVASP_NonCol=/opt/vasp/vasp.5.4/vasp.5.4.1/bin/vasp_ncl
runVASP_GAMMA=/opt/vasp/vasp.5.4/vasp.5.4.1/bin/vasp_gam

set i=1
while ( $i < 100 )
     cp POSCAR POSCAR.$i
     $MPI_EXEC -machinefile $TMPDIR/machines -n $NSLOTS $runVASP > stdout
     cp CONCAR POSCAR
     cp REPORT REPORT.$1
     cp HILLSPOT PENALTYPOT
     @ i++
end


Thanks!




Moderator's Comments:
Mod Comment Please use CODE tags as required by forum rules!

Last edited by RudiC; 07-17-2018 at 06:02 AM.. Reason: Added CODE tags.
 

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GCORE(1)						      General Commands Manual							  GCORE(1)

NAME
gcore - get core image of running process SYNOPSIS
gcore [-s][-c core] pid DESCRIPTION
gcore creates a core image of each specified process, suitable for use with adb(1). By default the core image is written to the file <pid>.core. The options are: -c Write the core file to the specified file instead of <pid>.core. -s Stop the process while creating the core image and resume it when done. This makes sure that the core dump will be in a consistent state. The process is resumed even if it was already stopped. Of course, you can obtain the same result by manually stopping the process with kill(1). The core image name was changed from core.<pid> to <pid>.core to prevent matching names like core.h and core.c when using programs such as find(1). FILES
<process-id>.core The core image. BUGS
If gcore encounters an error while creating the core image and the -s option was used the process will remain stopped. Swapped out processes and system processes (the swapper) may not be gcore'd. 4.2 Berkeley Distribution April 15, 1994 GCORE(1)
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