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Full Discussion: Trouble looping commands
Top Forums UNIX for Beginners Questions & Answers Trouble looping commands Post 303019348 by tim.morris on Wednesday 27th of June 2018 10:48:06 AM
Old 06-27-2018
Trouble looping commands

Hi,

I have encountered a problem that I am unable to find a workaround for. I have 52 numbers and I need to submit an individual job for each pair combination, so too many to do by hand.

I have created a submission file (submission_code.sh) which contains the following code:

Code:
gcta64 --reml-bivar $a $b --out out_$a_$b; sleep 1

And I have created a loop file which contains the following code:

Code:
for a in `seq 1 52`
 do
  for b in `seq 1 52`
   do
  echo $a $b
  bash submission_code.sh
 sleep 1
done
done

The code runs, but it does not pass over the sequence numbers from the loop file to the submission file. Instead for "a" and "b" that values used are 1 and 2, which are the default used by the programme.

Can anyone help with this?

Moderator's Comments:
Mod Comment Please use CODE tags as required by forum rules!

Last edited by RudiC; 06-27-2018 at 04:00 PM.. Reason: Added CODE tags.
 

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IO::Async::PID(3pm)					User Contributed Perl Documentation				       IO::Async::PID(3pm)

NAME
"IO::Async::PID" - event callback on exit of a child process SYNOPSIS
use IO::Async::PID; use POSIX qw( WEXITSTATUS ); use IO::Async::Loop; my $loop = IO::Async::Loop->new; my $kid = $loop->fork( code => sub { print "Child sleeping.. "; sleep 10; print "Child exiting "; return 20; }, ); print "Child process $kid started "; my $pid = IO::Async::PID->new( pid => $kid, on_exit => sub { my ( $self, $exitcode ) = @_; printf "Child process %d exited with status %d ", $self->pid, WEXITSTATUS($exitcode); }, ); $loop->add( $pid ); $loop->run; DESCRIPTION
This subclass of IO::Async::Notifier invokes its callback when a process exits. For most use cases, a IO::Async::Process object provides more control of setting up the process, connecting filehandles to it, sending data to and receiving data from it. EVENTS
The following events are invoked, either using subclass methods or CODE references in parameters: on_exit $exitcode Invoked when the watched process exits. PARAMETERS
The following named parameters may be passed to "new" or "configure": pid => INT The process ID to watch. Must be given before the object has been added to the containing "IO::Async::Loop" object. on_exit => CODE CODE reference for the "on_exit" event. Once the "on_exit" continuation has been invoked, the "IO::Async::PID" object is removed from the containing "IO::Async::Loop" object. METHODS
$process_id = $pid->pid Returns the underlying process ID $pid->kill( $signal ) Sends a signal to the process AUTHOR
Paul Evans <leonerd@leonerd.org.uk> perl v5.14.2 2012-10-24 IO::Async::PID(3pm)
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