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Full Discussion: Trouble looping commands
Top Forums UNIX for Beginners Questions & Answers Trouble looping commands Post 303019348 by tim.morris on Wednesday 27th of June 2018 10:48:06 AM
Old 06-27-2018
Trouble looping commands

Hi,

I have encountered a problem that I am unable to find a workaround for. I have 52 numbers and I need to submit an individual job for each pair combination, so too many to do by hand.

I have created a submission file (submission_code.sh) which contains the following code:

Code:
gcta64 --reml-bivar $a $b --out out_$a_$b; sleep 1

And I have created a loop file which contains the following code:

Code:
for a in `seq 1 52`
 do
  for b in `seq 1 52`
   do
  echo $a $b
  bash submission_code.sh
 sleep 1
done
done

The code runs, but it does not pass over the sequence numbers from the loop file to the submission file. Instead for "a" and "b" that values used are 1 and 2, which are the default used by the programme.

Can anyone help with this?

Moderator's Comments:
Mod Comment Please use CODE tags as required by forum rules!

Last edited by RudiC; 06-27-2018 at 04:00 PM.. Reason: Added CODE tags.
 

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Locale::Codes::LangFam(3pm)				 Perl Programmers Reference Guide			       Locale::Codes::LangFam(3pm)

NAME
Locale::Codes::LangFam - standard codes for language extension identification SYNOPSIS
use Locale::Codes::LangFam; $lext = code2langfam('apa'); # $lext gets 'Apache languages' $code = langfam2code('Apache languages'); # $code gets 'apa' @codes = all_langfam_codes(); @names = all_langfam_names(); DESCRIPTION
The "Locale::Codes::LangFam" module provides access to standard codes used for identifying language families, such as those as defined in ISO 639-5. Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default ISO 639-5 language family codes will be used. SUPPORTED CODE SETS
There are several different code sets you can use for identifying language families. A code set may be specified using either a name, or a constant that is automatically exported by this module. For example, the two are equivalent: $lext = code2langfam('apa','alpha'); $lext = code2langfam('apa',LOCALE_LANGFAM_ALPHA); The codesets currently supported are: alpha This is the set of three-letter (lowercase) codes from ISO 639-5 such as 'apa' for Apache languages. This is the default code set. ROUTINES
code2langfam ( CODE [,CODESET] ) langfam2code ( NAME [,CODESET] ) langfam_code2code ( CODE ,CODESET ,CODESET2 ) all_langfam_codes ( [CODESET] ) all_langfam_names ( [CODESET] ) Locale::Codes::LangFam::rename_langfam ( CODE ,NEW_NAME [,CODESET] ) Locale::Codes::LangFam::add_langfam ( CODE ,NAME [,CODESET] ) Locale::Codes::LangFam::delete_langfam ( CODE [,CODESET] ) Locale::Codes::LangFam::add_langfam_alias ( NAME ,NEW_NAME ) Locale::Codes::LangFam::delete_langfam_alias ( NAME ) Locale::Codes::LangFam::rename_langfam_code ( CODE ,NEW_CODE [,CODESET] ) Locale::Codes::LangFam::add_langfam_code_alias ( CODE ,NEW_CODE [,CODESET] ) Locale::Codes::LangFam::delete_langfam_code_alias ( CODE [,CODESET] ) These routines are all documented in the Locale::Codes::API man page. SEE ALSO
Locale::Codes The Locale-Codes distribution. Locale::Codes::API The list of functions supported by this module. http://www.loc.gov/standards/iso639-5/id.php ISO 639-5 . AUTHOR
See Locale::Codes for full author history. Currently maintained by Sullivan Beck (sbeck@cpan.org). COPYRIGHT
Copyright (c) 2011-2013 Sullivan Beck This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself. perl v5.18.2 2013-11-04 Locale::Codes::LangFam(3pm)
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