The file is not too big. Not expecting the results.txt to have more than 200 lines.
It does create separate files but the header and the first two columns are missing from the output. [The header or first row ends up being a separate file by itself by the name of "Sample.txt"]
Trying this
but doesn't produce a tab-delimited file with all contents
Last edited by nans; 06-01-2018 at 02:24 PM..
Reason: specified file type
i have been doing this script to match every line in a current log file (access_log) with strings that i list from a path (consist of 100 of user's name ex: meggae )..
and then make a directory of every string from the text file (/path/meggae/) --->if it matched..
then print every line from the... (3 Replies)
FOLKS ,
i have a text file that is generated automatically of an another korn shell script, i want to bring in the fifth line of the text file in to my korn shell script and look for a particular word in the line . Can you all share some thoughts on this one.
thanks...
Venu (3 Replies)
Dear all,
I am trying to extract a number from a line in one file (task 1), duplicate another file (task 2) and replace all instances of the strings 300, in duplicated with the extracted number (task 3). Here is what I have tried so far:
for ((k=1;k<4;k++)); do
temp=`sed -n "${k}p"... (2 Replies)
Hi All,
I have a file, let's call it "info.tmp" that contains data like this ..
ABC123456
PCX333445
BCD789833
I need to read "info.tmp" and for each line add strings in a way that the final output is
put /logs/ua/dummy.trigger 'AAA00001.FTP.XXX.BLA03A01.xxxxxx(+1)'
where XXX... (5 Replies)
Hi friends,
I have a doubt, I am not sure whether it is possible ah nu.
I am having a file(sample.txt) which contain 5 lines.
I want to remove 1st line in the file and save the file with same old name (sample.txt).
For removing 1st line i am using
sed 1d filename
But dono how to... (3 Replies)
I have a LOG file which looks like this
Import started at: Mon Jul 23 02:13:01 EDT 2012
Initialization completed in 2.146 seconds.
--------------------------------------------------------------------------------
--
Import summary for Import item: PolicyInformation... (8 Replies)
Dear All
I am using the following shell script to extract the columns from the file.
for filename in *.rpt
do
awk -F"\t" '
BEGIN {OFS="|"} FNR > 0 {print $1,$2,$3,$5,FILENAME}
' $filename >> output.txt
done
However, the script works fine. Instead of saving the single... (4 Replies)
Hi
This is my first post and I'm just a beginner. So please be nice to me.
I have a couple of html files where a pattern beginning with "http://www.site.com" and ending with "/resource.dat" is present on every 241st line. How do I extract this to a new text file?
I have tried sed -n 241,241p... (13 Replies)
In the below perl code I am using tags within each line to extract certain information. The tags that are used are:
STB >0.8 is STRAND BIAS otherwise GOOD
FDP is the second number
GO towards the end of the line is read into an array and the value returned is outputed, in the first line that... (1 Reply)
Discussion started by: cmccabe
1 Replies
LEARN ABOUT DEBIAN
ace::sequence::gene
Ace::Sequence::Gene(3pm) User Contributed Perl Documentation Ace::Sequence::Gene(3pm)NAME
Ace::Sequence::Gene - Simple "Gene" Object
SYNOPSIS
# open database connection and get an Ace::Object sequence
use Ace::Sequence;
# get a megabase from the middle of chromosome I
$seq = Ace::Sequence->new(-name => 'CHROMOSOME_I,
-db => $db,
-offset => 3_000_000,
-length => 1_000_000);
# get all the genes
@genes = $seq->genes;
# get the exons from the first one
@exons = $genes[0]->exons;
# get the introns
@introns = $genes[0]->introns
# get the CDSs (NOT IMPLEMENTED YET!)
@cds = $genes[0]->cds;
DESCRIPTION
Ace::Sequence::Gene is a subclass of Ace::Sequence::Feature. It inherits all the methods of Ace::Sequence::Feature, but adds the ability
to retrieve the annotated introns and exons of the gene.
OBJECT CREATION
You will not ordinarily create an Ace::Sequence::Gene object directly. Instead, objects will be created in response to a genes() call to
an Ace::Sequence object.
OBJECT METHODS
Most methods are inherited from Ace::Sequence::Feature. The following methods are also supported:
exons()
@exons = $gene->exons;
Return a list of Ace::Sequence::Feature objects corresponding to annotated exons.
introns()
@introns = $gene->introns;
Return a list of Ace::Sequence::Feature objects corresponding to annotated introns.
cds()
@cds = $gene->cds;
Return a list of Ace::Sequence::Feature objects corresponding to coding sequence. THIS IS NOT YET IMPLEMENTED.
relative()
$relative = $gene->relative;
$gene->relative(1);
This turns on and off relative coordinates. By default, the exons and intron features will be returned in the coordinate system used
by the gene. If relative() is set to a true value, then coordinates will be expressed as relative to the start of the gene. The first
exon will (usually) be 1.
SEE ALSO
Ace, Ace::Object, Ace::Sequence,Ace::Sequence::Homol, Ace::Sequence::Feature, Ace::Sequence::FeatureList, GFF
AUTHOR
Lincoln Stein <lstein@cshl.org> with extensive help from Jean Thierry-Mieg <mieg@kaa.crbm.cnrs-mop.fr>
Copyright (c) 1999, Lincoln D. Stein
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for
disclaimers of warranty.
POD ERRORS
Hey! The above document had some coding errors, which are explained below:
Around line 148:
You forgot a '=back' before '=head1'
perl v5.14.2 2001-02-18 Ace::Sequence::Gene(3pm)