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Top Forums Shell Programming and Scripting Sum elements of 2 arrays excluding labels Post 303014972 by Geneanalyst on Saturday 24th of March 2018 08:49:11 PM
Old 03-24-2018
Question Sum elements of 2 arrays excluding labels

I'm looking for an efficient way to sum elements from 2 arrays using AWK and preserve header as well as sample names in the output array. I have Ubuntu 16.04 LTS. For example;

ARRAY 1

Code:
SAMPLE    DERIVED    ANCESTRAL
Sample1    14352    0
Sample2    14352    0
Sample3    14352    0
Sample4    9880    4472
Sample5    9786    4566
Sample6    9846    4506
Sample7    9787    4565
Sample8    9800    4552
Sample9    9764    4588
Sample10    9760    4592
Sample11    9691    4661
Sample12    9798    4554
Sample13    9740    4612


ARRAY 2:

Code:
SAMPLE    DERIVED    ANCESTRAL
Sample1    14352    0
Sample2    14352    0
Sample3    14352    0
Sample4    13674    678
Sample5    13749    603
Sample6    13701    651
Sample7    13682    670
Sample8    13677    675
Sample9    13684    668
Sample10    13674    678
Sample11    13642    710
Sample12    13679    673
Sample13    13713    639


DESIRED OUTPUT ARRAY:
Code:
SAMPLE    TOTAL DERIVED    TOTAL ANCESTRAL
Sample1    28704    0
Sample2    28704    0
Sample3    28704    0
Sample4    23554    5150
Sample5    23535    5169
Sample6    23547    5157
Sample7    23469    5235
Sample8    23477    5227
Sample9    23448    5256
Sample10    23434    5270
Sample11    23333    5371
Sample12    23477    5227
Sample13    23453    5251

 

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Devel::Refcount(3pm)					User Contributed Perl Documentation				      Devel::Refcount(3pm)

NAME
"Devel::Refcount" - obtain the REFCNT value of a referent SYNOPSIS
use Devel::Refcount qw( refcount ); my $anon = []; print "Anon ARRAY $anon has " . refcount($anon) . " reference "; my $otherref = $anon; print "Anon ARRAY $anon now has " . refcount($anon) . " references "; DESCRIPTION
This module provides a single function which obtains the reference count of the object being pointed to by the passed reference value. FUNCTIONS
$count = refcount($ref) Returns the reference count of the object being pointed to by $ref. COMPARISON WITH SvREFCNT This function differs from "Devel::Peek::SvREFCNT" in that SvREFCNT() gives the reference count of the SV object itself that it is passed, whereas refcount() gives the count of the object being pointed to. This allows it to give the count of any referent (i.e. ARRAY, HASH, CODE, GLOB and Regexp types) as well. Consider the following example program: use Devel::Peek qw( SvREFCNT ); use Devel::Refcount qw( refcount ); sub printcount { my $name = shift; printf "%30s has SvREFCNT=%d, refcount=%d ", $name, SvREFCNT($_[0]), refcount($_[0]); } my $var = []; printcount 'Initially, $var', $var; my $othervar = $var; printcount 'Before CODE ref, $var', $var; printcount '$othervar', $othervar; my $code = sub { undef $var }; printcount 'After CODE ref, $var', $var; printcount '$othervar', $othervar; This produces the output Initially, $var has SvREFCNT=1, refcount=1 Before CODE ref, $var has SvREFCNT=1, refcount=2 $othervar has SvREFCNT=1, refcount=2 After CODE ref, $var has SvREFCNT=2, refcount=2 $othervar has SvREFCNT=1, refcount=2 Here, we see that SvREFCNT() counts the number of references to the SV object passed in as the scalar value - the $var or $othervar respectively, whereas refcount() counts the number of reference values that point to the referent object - the anonymous ARRAY in this case. Before the CODE reference is constructed, both $var and $othervar have SvREFCNT() of 1, as they exist only in the current lexical pad. The anonymous ARRAY has a refcount() of 2, because both $var and $othervar store a reference to it. After the CODE reference is constructed, the $var variable now has an SvREFCNT() of 2, because it also appears in the lexical pad for the new anonymous CODE block. PURE-PERL FALLBACK An XS implementation of this function is provided, and is used by default. If the XS library cannot be loaded, a fallback implementation in pure perl using the "B" module is used instead. This will behave identically, but is much slower. Rate pp xs pp 225985/s -- -66% xs 669570/s 196% -- SEE ALSO
o Test::Refcount - assert reference counts on objects AUTHOR
Paul Evans <leonerd@leonerd.org.uk> perl v5.14.2 2011-11-15 Devel::Refcount(3pm)
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