So the portion in bold identifies ${id} as 1234 perfectly, however it does not store it so the for loop can use it and output the file with the 1234. Do I not need a loop even though ${id} could be multiple? Thank you .
Code:
# read id from target.txt
dir_path=C:/Users/cmccabe/Desktop/annovar
while IFS= read line
do
id=${line%.*}
echo "$dir_path/${id}.hg19_multianno.txt"
done < target.txt
# remove -dbnsfp33a fields 49-96 from multianno
${id}=(line)
for f in 'C:\Users\cmccabe\Desktop\annovar\${id}.txt.hg19_multianno.txt' ; do
bname=`basename $f`
pref=${bname%%$.*.txt}
awk -v F=49 -v T=96 '
BEGIN{FS=OFS="\t"}
{ b=T+1
t=T<NF?T:NF
for(i=F;i<NF-t+F;i++) $i=$(b++)
NF=--i}1' $f > C:/Users/cmccabe/Desktop/annovar/${pref}_dbremoved.txt
done
Last edited by cmccabe; 10-26-2017 at 10:04 AM..
Reason: added to scipt
I]hi all
i am in confusion since last 2 days :(
i posted thraed yesterday and some friends did help but still i couldnt get solution to my problem
let it be very clear
i have a long log file of alkatel switch and i have to seperate the minor major and critical alarms shown by ! , !! and !!!... (6 Replies)
Hi, I need
to make some extraction . with the following input to get the right output.
input: /etc/exp/home/bin ====> output: exp
and
input: aex1234 ===> output: ex
Thanks for your help, (4 Replies)
Following is input:
<P
align="justify"
><FONT size="+1" color="#221E1F">the tiny bundles of hairs that protrude from them. Waves in the fluid of the inner ear stimulate the hair cells. Like the rods and cones in the eye, the hair cells convert this physical stimulation into neural im<FONT... (1 Reply)
Hi,
I need to write a script, that will take the current date, time, and the output from # ps -eo pid,tid,class,rtprio,ni,pri,psr,pcpu,stat,wchan:14,comm
and spit it to a file, so it'll look like this...
PID TID CLS RTPRIO NI PRI PSR %CPU STAT WCHAN COMMAND
1 1 TS... (2 Replies)
Hello All,
I have a file in the following format. I want to extract the date(020090930, 020090929) in the string "STPAGE020090930" and "STPAGE020090929" and prefix it to all lines below them. The output must be put into a new file.
STPAGE020090930
xyzz aalc... (3 Replies)
Hi,
I have two files , one file with data file with attributes that need to be sent to another file to generate a predefined format.
Example:
File.txt
AP|{SSHA}VEEg42CNCghUnGhCVg==
APVG3|{SSHA}XK|"password"
AP3|{SSHA}XK|"This is test"
....
etc
---------
test.sh has... (1 Reply)
This is the sample input file
b 05/Jul/2010:07:00:10
a 05/Jul/2010:06:00:10
b 05/Jul/2010:07:00:10
c 05/Jul/2010:07:10:10
d 05/Jul/2010:08:00:10
e 05/Jul/2010:09:00:10
f 05/Jul/2010:10:00:10
h 05/Jul/2010:11:00:10
i 05/Jul/2010:12:00:10
j ... (9 Replies)
Dear All,
assume i have a file with content:
<Start>6000</Start>
<Stop>7599</Stop>
the output is:
6000
7000
7100
7200
7300
7400
7599
how should we use any awk, sed, perl can do this task, means to extract the uniq prefixes from the start and stop prefix.
Thanks
Jimmy (3 Replies)
In the bash below in each .zip there is a folder to be extracted Variants that I am trying to make unique by adding the prefix, before the _ from the .zip. The script does execute, but the prefix is not added to the extracted folder. Rather the Variants folder is added to each file within it. Thank... (1 Reply)
I am trying to use bash to loop through a directory /path/to/data using a prefix match from /path/to/file. That match is obtained and works using the code below (in green)... what I can not seem to do is populate or update the corresponding prefix_file.txt in /path/to/data with the values in each... (3 Replies)
Discussion started by: cmccabe
3 Replies
LEARN ABOUT DEBIAN
gtkdoc-mktmpl
gtkdoc-mktmpl(1) General Commands Manual gtkdoc-mktmpl(1)NAME
gtkdoc-mktmpl -- GTK DocBook documentation generator.
SYNOPSIS
gtkdoc-mktmpl [ See below ]
DESCRIPTION
gtkdoc-mktmpl This creates or updates the template files which contain the manually-edited documentation. (A template is a simple text form
which is filled in with the description of a function, macro, enum, or struct. For functions and macros it also contains fields for
describing the parameters.)
This script reads in the existing templates, found in tmpl/*.sgml, moves these files to tmpl/*.sgml.bak, and then recreates the .sgml files
according to the structure given in the file MODULE-sections.txt.
Any new templates added, or new function parameters, are marked with FIXME so you can do a grep to see which parts need updating.
Any templates which are no longer used (i.e. they are remove from MODULE-sections.txt) are placed in the file tmpl/MODULE-unused.txt. If
they are included again later they are automatically copied back into position. If you are certain that these templates will never be used
again you can delete them from MODULE-unused.txt.
Any parameters to functions which are no longer used are separated from the rest of the parameters with the line <!-- # Unused Parameters #
-->. It may be that the parameter name has just been changed, in which case you can copy the description to the parameter with the new
name. You can delete the unused parameter descriptions when no longer needed.
EXAMPLE
See /usr/share/doc/gtk-doc-tools/examples, for a makefile.am and a configure.in example file.
AUTHOR
This manual page was written by Christian Marillat marillat@debian.org for the Debian GNU/Linux system (but may be used by others).
gtkdoc-mktmpl(1)
10-26-2017
.