Sponsored Content
Top Forums Shell Programming and Scripting Apply command to all files in folder Post 303004633 by RudiC on Thursday 5th of October 2017 10:39:39 AM
Old 10-05-2017
I'm surprised that the -E option to grep should be necessary for the first but not for the second grep?
 

10 More Discussions You Might Find Interesting

1. UNIX for Dummies Questions & Answers

unix command to cound the number of files in a folder

Hi All Can some one help me out. Please tell the unix command to cound the number of files in a folder. Ungent please# Thanks manas (6 Replies)
Discussion started by: manas6
6 Replies

2. Shell Programming and Scripting

using mv command for moving multiple files in a folder

Hi, I have a requirement where I need to move Bunch of folders containing multiple files to another archive location. i want to use mv command .I am thinking when we use mv command to move directory does it create directory 1st and then move all the files ? e.g source... (4 Replies)
Discussion started by: rkmbcbs
4 Replies

3. UNIX for Advanced & Expert Users

UNIX: Command to compress folder and all files into a tar

I am trying to grab a folder and all the folders and files underneath it and send it from one computer to another. I basically want to compress the whole folder into a tar, tgz, or zip file so that it can be sent as one file. is there a command to compress a folder and all its contents into a tar... (7 Replies)
Discussion started by: kane4355
7 Replies

4. Shell Programming and Scripting

Apply 'awk' to all files in a directory or individual files from a command line

Hi All, I am using the awk command to replace ',' by '\t' (tabs) in a csv file. I would like to apply this to all .csv files in a directory and create .txt files with the tabs. How would I do this in a script? I have the following script called "csvtabs": awk 'BEGIN { FS... (4 Replies)
Discussion started by: ScKaSx
4 Replies

5. UNIX for Dummies Questions & Answers

how to create a command that would print files only from 1 folder

Hi there how to create a command in csh that would print files only from 1 folder but as an argument takes home directory for e.g. in my home diecrtory I have 3 folders unix, windows,mac and alot of files. and I running the program as ./op ~ this should return me files from unix folder without... (1 Reply)
Discussion started by: FUTURE_EINSTEIN
1 Replies

6. Shell Programming and Scripting

reading information from a table and apply a command on multiple files

Hey gyuz, I wanna calculate the number of mapped reads of a bam file in a region of interest. I used this code to do so : samtools view input.bam chrname:region1 > region1.txt This will store all the reads from given bam file within the region of interest in region1.txt Now I have... (5 Replies)
Discussion started by: @man
5 Replies

7. UNIX for Dummies Questions & Answers

Select all files in a folder based on creation date (ls command)

Hi All, <Re-posting in Correct group> I'm trying to select all the files in a folder that starts with a particular name format and are created in a gven date range using 'ls' command...but i'm not successful.... Example : I'm trying to see all the text files in a folder who names start... (6 Replies)
Discussion started by: Satya C1
6 Replies

8. Shell Programming and Scripting

find command to move the files to other folder - ksh 88

Hi , I've learnt that the following command will remove the files from the given folder for given no.of days find /home/etc -type f -atime -10 -exec rm -f {} \; But how can I change the above command that will move the files to another specified directory instead of removing the... (1 Reply)
Discussion started by: smile689
1 Replies

9. Shell Programming and Scripting

How to use a loop for multiple files in a folder to run awk command?

Dear folks I have two data set which there names are "final.map" and "1.geno" and look like this structures: final.map: gi|358485511|ref|NC_006088.3| 2044 gi|358485511|ref|NC_006088.3| 2048 gi|358485511|ref|NC_006088.3| 2187 gi|358485511|ref|NC_006088.3| 17654 ... (2 Replies)
Discussion started by: sajmar
2 Replies

10. UNIX for Dummies Questions & Answers

Loop awk command on files in a folder

Hi, I'd like to loop an action over all files with given extension within a folder. The "main" action is: awk -F "\t" 'BEGIN{OFS="\t"}{if ($10=="S") print$0; }' input.txt > output.txt The input.txt should be every file in the folder with *.subVCF extension; and the output should be a file... (3 Replies)
Discussion started by: dovah
3 Replies
ZGREP(1)						      General Commands Manual							  ZGREP(1)

NAME
zgrep - search possibly compressed files for a regular expression SYNOPSIS
zgrep [ grep_options ] [ -e ] pattern filename... DESCRIPTION
Zgrep invokes grep on compressed or gzipped files. These grep options will cause zgrep to terminate with an error code: (-[drRzZ]|--di*|--exc*|--inc*|--rec*|--nu*). All other options specified are passed directly to grep. If no file is specified, then the standard input is decompressed if necessary and fed to grep. Otherwise the given files are uncompressed if necessary and fed to grep. If the GREP environment variable is set, zgrep uses it as the grep program to be invoked. EXIT CODE
2 - An option that is not supported was specified. AUTHOR
Charles Levert (charles@comm.polymtl.ca) SEE ALSO
grep(1), gzexe(1), gzip(1), zdiff(1), zforce(1), zmore(1), znew(1) ZGREP(1)
All times are GMT -4. The time now is 05:46 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy