Hi,
I am having problem of linking .o and I am working with HP -UX gcc version is 3.4.2 . I have complied few cpp files and got .o's. But at the time of linking i am having issue.
it is returning
ld: Can't find library or mismatched ABI for -lstdc++
Fatal error.
I have lib at location ... (0 Replies)
I started building a program which connects to MySQL and got:
ld: Can't find library or mismatched ABI for -lmysqlclient_r
I tried building my own MySQL and use these, and it worked but then it gave me:
ld: Can't find library or mismatched ABI for -lrt
But librt is a system library (and... (1 Reply)
Hi All,
while compiling on HP UX, i am getting the following error
ld: Can't find library or mismatched ABI for -lstlport_aCC
i am new to unix and HPUX, please suggest solution ASAS
thanks in advance
vindhyalesh (3 Replies)
Dear All,
Need your help to rectify this error.
Recently I have upgraded my Linux server from 32 bit to 64 bit server.
OS details are
Red Hat Enterprise Linux Server release 5.3
Kernel 2.6.18-120.el5 on an x86_64
After upgradation, when i try to compile or catalog any program, it is... (2 Replies)
Help needed...
Can you tell me how to compare the last two couple entries in a file and print their result in new file..:confused:
I have one file
Check1.txt
\abc1 12345
\abc2 12327
\abc1 12345
\abc2 12330
I want to compare the entries in Check1 and write to... (1 Reply)
Hi,
i've a .csv file with the data as below: -
file1.h, 2.0
file2.c, 3.1
file1.h, 2.5
file3.c, 3.3.3
file1.h, 1.2.3
I want to remove the duplicate file names considering only the one with the highest version number..
output should be
file1.h, 2.5
file2.c, 3.1
file3.c,... (3 Replies)
I have a table with one column
File1.txt
1
2
3
4
5
6
7
8
9
10
Another table with two columns; This has got a subset of entries from File 1 but not unique because they have differing values in col 2.
File2.txt
1 a
2 d
2 f
6 r
6 e (3 Replies)
I have a dataset with 120 columns. I would like to write a script, that takes the average of every two columns, starting from columns 2 and 3, and moving consecutively in frames of 3 columns, all the way until the last column.
The first column in the output file would be the averages of columns... (1 Reply)
Hi all,
I have a file where in it has lot of records in it.
I have written below stuff to find the number of fields as shown below
`awk -F '|' '{print NF-1}' file.txt| head -1`
how do i proceed if in case any record in particular is having more number of delimiters, if it having??? what... (7 Replies)
Could you tell me the possibilities of the reason to get the Mismatched free() / delete / delete .
I unable to see the line no in the valgrind report. it displays the function name. with that function name, I am not able to find where exactly the issue is there.I am getting the Mismatched free()... (3 Replies)
Discussion started by: SA_Palani
3 Replies
LEARN ABOUT DEBIAN
re-pcr
RE-PCR(1) General Commands Manual RE-PCR(1)NAME
re-PCR -- Find sequence tagged sites (STS) in DNA sequences
SYNOPSIS
re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...]
re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...]
re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]]
re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...]
DESCRIPTION
Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per-
forming STS and primer searches.
OPTIONS -p=hash-file
Perform primer lookup using hash-file
-P=hash-file
Perform primer lookup using hash-file
-s=hash-file
Perform STS lookup using hash-file
-S=hash-file
Perform STS lookup using hash-file
-n=mism Set max allowed mismatches per primer for lookup
-g=gaps Set max allowed indels per primer for lookup
-m=margin Set variability for STS size for lookup
-l Use presize alignments (only if gaps>0)
-G Print alignments in comments
-d=min-max
Set default STS size
-r=+|- Enable/disable reverse STS lookup
-O=+|- Enable/disable syscall optimisation
-C=batchcnt
Set number of STSes per batch
-o=outfile
Set output file name
-q Quiet (no progress indicator)
EXAMPLE
famap -tN -b genome.famap org/chr_*.fa
fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap
re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200
See famap(1) and fahash(1)SEE ALSO
/usr/share/doc/ncbi-epcr/README.txt
bioperl(1), e-pcr(1), famap(1) and fahash(1)AUTHORS
This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others). Permission is granted
to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by
the Free Software Foundation.
On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.
April 2008 RE-PCR(1)