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Top Forums Shell Programming and Scripting Perl to parse a variety of formats Post 302996751 by cmccabe on Tuesday 2nd of May 2017 02:37:17 AM
Old 05-02-2017
Since my input could contain multiple format types, I use multiple regex to capture them. I see your point but need to redo for each condition. They aren't in every file, but the format is often different.

For example,

A SNP regex would not work for an insertion (comments on each line). Thank you very much for the suggestion and help, it is working ).

Last edited by cmccabe; 05-02-2017 at 08:40 AM..
 

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RE_COMP(3)						     Linux Programmer's Manual							RE_COMP(3)

NAME
re_comp, re_exec - BSD regex functions SYNOPSIS
#define _REGEX_RE_COMP #include <sys/types.h> #include <regex.h> char *re_comp(char *regex); int re_exec(char *string); DESCRIPTION
re_comp() is used to compile the null-terminated regular expression pointed to by regex. The compiled pattern occupies a static area, the pattern buffer, which is overwritten by subsequent use of re_comp(). If regex is NULL, no operation is performed and the pattern buffer's contents are not altered. re_exec() is used to assess whether the null-terminated string pointed to by string matches the previously compiled regex. RETURN VALUE
re_comp() returns NULL on successful compilation of regex otherwise it returns a pointer to an appropriate error message. re_exec() returns 1 for a successful match, zero for failure. ATTRIBUTES
Multithreading (see pthreads(7)) The re_comp() and re_exec() functions are not thread-safe. CONFORMING TO
4.3BSD. NOTES
These functions are obsolete; the functions documented in regcomp(3) should be used instead. SEE ALSO
regcomp(3), regex(7), GNU regex manual COLOPHON
This page is part of release 3.53 of the Linux man-pages project. A description of the project, and information about reporting bugs, can be found at http://www.kernel.org/doc/man-pages/. GNU
2013-06-21 RE_COMP(3)
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